Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28765 | 3' | -54.3 | NC_006146.1 | + | 61819 | 0.68 | 0.893522 |
Target: 5'- aCAUUAGGGGcGCUGGugGGGG-CagUGg -3' miRNA: 3'- aGUGAUUCCU-UGACCugCCCCaGg-AC- -5' |
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28765 | 3' | -54.3 | NC_006146.1 | + | 12683 | 0.68 | 0.893522 |
Target: 5'- aCGCUGugcaccaacuucAGGAGcCUGGccauugacaAgGGGGUCCUGa -3' miRNA: 3'- aGUGAU------------UCCUU-GACC---------UgCCCCAGGAC- -5' |
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28765 | 3' | -54.3 | NC_006146.1 | + | 127145 | 0.69 | 0.886751 |
Target: 5'- cCGCgu-GGAGCUGGACGGcGUCa-- -3' miRNA: 3'- aGUGauuCCUUGACCUGCCcCAGgac -5' |
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28765 | 3' | -54.3 | NC_006146.1 | + | 136986 | 0.69 | 0.886751 |
Target: 5'- cCACcggaccgGAGGAGCUccaGGACGGGGguaggCCg- -3' miRNA: 3'- aGUGa------UUCCUUGA---CCUGCCCCa----GGac -5' |
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28765 | 3' | -54.3 | NC_006146.1 | + | 122484 | 0.69 | 0.865099 |
Target: 5'- gUUGCUcGGGGACgGcGGCGGGGUCgaGa -3' miRNA: 3'- -AGUGAuUCCUUGaC-CUGCCCCAGgaC- -5' |
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28765 | 3' | -54.3 | NC_006146.1 | + | 167382 | 0.69 | 0.8496 |
Target: 5'- -gGCUGAgGGGGCUcccgaGGGCGGGGccggggCCUGg -3' miRNA: 3'- agUGAUU-CCUUGA-----CCUGCCCCa-----GGAC- -5' |
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28765 | 3' | -54.3 | NC_006146.1 | + | 168314 | 0.69 | 0.8496 |
Target: 5'- -gGCUGAgGGGGCUcccgaGGGCGGGGccggggCCUGg -3' miRNA: 3'- agUGAUU-CCUUGA-----CCUGCCCCa-----GGAC- -5' |
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28765 | 3' | -54.3 | NC_006146.1 | + | 169246 | 0.69 | 0.8496 |
Target: 5'- -gGCUGAgGGGGCUcccgaGGGCGGGGccggggCCUGg -3' miRNA: 3'- agUGAUU-CCUUGA-----CCUGCCCCa-----GGAC- -5' |
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28765 | 3' | -54.3 | NC_006146.1 | + | 170177 | 0.69 | 0.8496 |
Target: 5'- -gGCUGAgGGGGCUcccgaGGGCGGGGccggggCCUGg -3' miRNA: 3'- agUGAUU-CCUUGA-----CCUGCCCCa-----GGAC- -5' |
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28765 | 3' | -54.3 | NC_006146.1 | + | 51170 | 0.7 | 0.816279 |
Target: 5'- cCGCUGuGGGugUGGAagGGGGUCUg- -3' miRNA: 3'- aGUGAUuCCUugACCUg-CCCCAGGac -5' |
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28765 | 3' | -54.3 | NC_006146.1 | + | 118216 | 0.71 | 0.770912 |
Target: 5'- cCGCcc-GGAGCUGGACGauGUCCUGg -3' miRNA: 3'- aGUGauuCCUUGACCUGCccCAGGAC- -5' |
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28765 | 3' | -54.3 | NC_006146.1 | + | 164329 | 0.73 | 0.672007 |
Target: 5'- gUCACUGAG--ACUGGGCGGGGUg--- -3' miRNA: 3'- -AGUGAUUCcuUGACCUGCCCCAggac -5' |
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28765 | 3' | -54.3 | NC_006146.1 | + | 161758 | 0.74 | 0.645389 |
Target: 5'- -gGCUGAGGuccgagggggcgcCUGGGCGGGGgCCUGa -3' miRNA: 3'- agUGAUUCCuu-----------GACCUGCCCCaGGAC- -5' |
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28765 | 3' | -54.3 | NC_006146.1 | + | 114341 | 0.75 | 0.549543 |
Target: 5'- cCcCUGAcGGAGgUGGACGGGGgCCUGg -3' miRNA: 3'- aGuGAUU-CCUUgACCUGCCCCaGGAC- -5' |
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28765 | 3' | -54.3 | NC_006146.1 | + | 132350 | 1.08 | 0.005381 |
Target: 5'- gUCACUAAGGAACUGGACGGGGUCCUGc -3' miRNA: 3'- -AGUGAUUCCUUGACCUGCCCCAGGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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