miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28766 5' -57.8 NC_006146.1 + 137178 0.67 0.817116
Target:  5'- ---gGACCGGagGAgcuccagaacggGGGUagGCCGGGCa -3'
miRNA:   3'- cagaCUGGCCagUU------------UCCGa-CGGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 136991 0.67 0.817116
Target:  5'- ---gGACCGGagGAgcuccaggacggGGGUagGCCGGGCa -3'
miRNA:   3'- cagaCUGGCCagUU------------UCCGa-CGGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 136721 0.67 0.817116
Target:  5'- --gUGGCCGG-Cc---GCUGCCGGGUc -3'
miRNA:   3'- cagACUGGCCaGuuucCGACGGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 123023 0.67 0.808541
Target:  5'- -gCUGACCGaGgCcGAGGCggcccagGuCCGGGCg -3'
miRNA:   3'- caGACUGGC-CaGuUUCCGa------C-GGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 61413 0.67 0.799811
Target:  5'- -gCUGGCugCGGUggcCAAcgcGGGCacgGCCGGGCu -3'
miRNA:   3'- caGACUG--GCCA---GUU---UCCGa--CGGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 46788 0.67 0.799811
Target:  5'- -gCUGGCCGGccggcgCGAGGGCaaagGCCucuGGGUu -3'
miRNA:   3'- caGACUGGCCa-----GUUUCCGa---CGG---CCCG- -5'
28766 5' -57.8 NC_006146.1 + 43916 0.67 0.790935
Target:  5'- cUCcggGACCGcGUCGcccGGCaGUCGGGCg -3'
miRNA:   3'- cAGa--CUGGC-CAGUuu-CCGaCGGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 40323 0.67 0.790935
Target:  5'- ---aGGCCGGagGAGGGUaGCCGuGGUg -3'
miRNA:   3'- cagaCUGGCCagUUUCCGaCGGC-CCG- -5'
28766 5' -57.8 NC_006146.1 + 112512 0.67 0.790935
Target:  5'- gGUCcaggGGCCGGUgGAGGGC--CUGGGUc -3'
miRNA:   3'- -CAGa---CUGGCCAgUUUCCGacGGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 54863 0.67 0.781921
Target:  5'- ---cGGCCGGgaaaaauGGGCUGC-GGGCg -3'
miRNA:   3'- cagaCUGGCCaguu---UCCGACGgCCCG- -5'
28766 5' -57.8 NC_006146.1 + 137580 0.67 0.781921
Target:  5'- -gCUGcCCGGUCcuggagcucGGGCcggggGCCGGGUg -3'
miRNA:   3'- caGACuGGCCAGuu-------UCCGa----CGGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 37856 0.67 0.781921
Target:  5'- --gUGGCCGG-CGAccagauAGGCauagagcagGCCGGGCu -3'
miRNA:   3'- cagACUGGCCaGUU------UCCGa--------CGGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 17464 0.68 0.771856
Target:  5'- uGUCUagGGCCGGg-AGAGGCaGCCccgaggcGGGCa -3'
miRNA:   3'- -CAGA--CUGGCCagUUUCCGaCGG-------CCCG- -5'
28766 5' -57.8 NC_006146.1 + 20542 0.68 0.771856
Target:  5'- uGUCUagGGCCGGg-AGAGGCaGCCccgaggcGGGCa -3'
miRNA:   3'- -CAGA--CUGGCCagUUUCCGaCGG-------CCCG- -5'
28766 5' -57.8 NC_006146.1 + 23620 0.68 0.771856
Target:  5'- uGUCUagGGCCGGg-AGAGGCaGCCccgaggcGGGCa -3'
miRNA:   3'- -CAGA--CUGGCCagUUUCCGaCGG-------CCCG- -5'
28766 5' -57.8 NC_006146.1 + 14386 0.68 0.771856
Target:  5'- uGUCUagGGCCGGg-AGAGGCaGCCccgaggcGGGCa -3'
miRNA:   3'- -CAGA--CUGGCCagUUUCCGaCGG-------CCCG- -5'
28766 5' -57.8 NC_006146.1 + 26698 0.68 0.771856
Target:  5'- uGUCUagGGCCGGg-AGAGGCaGCCccgaggcGGGCa -3'
miRNA:   3'- -CAGA--CUGGCCagUUUCCGaCGG-------CCCG- -5'
28766 5' -57.8 NC_006146.1 + 81641 0.68 0.763511
Target:  5'- -gCUuGCCGGgacguuggggcUCGGAGGgUGCCGGGg -3'
miRNA:   3'- caGAcUGGCC-----------AGUUUCCgACGGCCCg -5'
28766 5' -57.8 NC_006146.1 + 39853 0.68 0.763511
Target:  5'- ---gGGCCGG-CGGGGGCUGugugcCCGGGg -3'
miRNA:   3'- cagaCUGGCCaGUUUCCGAC-----GGCCCg -5'
28766 5' -57.8 NC_006146.1 + 59317 0.68 0.763511
Target:  5'- -cCUGGCUGGcCgAGAGGCUGgCGGuGUu -3'
miRNA:   3'- caGACUGGCCaG-UUUCCGACgGCC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.