miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28767 5' -53.3 NC_006146.1 + 81655 0.67 0.956627
Target:  5'- uGGGGCUCGgaggGUgccgGGGAAGCGg--CGGGa -3'
miRNA:   3'- -UCCCGAGCa---CA----UCUUUCGUggaGUCC- -5'
28767 5' -53.3 NC_006146.1 + 116804 0.67 0.948497
Target:  5'- aAGGGCgUG-GUGGAGGGCGUC-CAGGa -3'
miRNA:   3'- -UCCCGaGCaCAUCUUUCGUGGaGUCC- -5'
28767 5' -53.3 NC_006146.1 + 67909 0.67 0.948497
Target:  5'- uGGGcCUCGUGggagccGAAGGUG-CUCAGGa -3'
miRNA:   3'- uCCC-GAGCACau----CUUUCGUgGAGUCC- -5'
28767 5' -53.3 NC_006146.1 + 114223 0.68 0.945874
Target:  5'- cAGGGCcagccccagGGGGcccGGCACCUCAGGg -3'
miRNA:   3'- -UCCCGagcaca---UCUU---UCGUGGAGUCC- -5'
28767 5' -53.3 NC_006146.1 + 4479 0.68 0.944077
Target:  5'- gGGGGCUgGUuacgugucuuGUGGAGauGGCACUggCGGGc -3'
miRNA:   3'- -UCCCGAgCA----------CAUCUU--UCGUGGa-GUCC- -5'
28767 5' -53.3 NC_006146.1 + 145830 0.68 0.944077
Target:  5'- aAGaGGCuUCGUGgguucAGCACgCUCAGGa -3'
miRNA:   3'- -UC-CCG-AGCACaucuuUCGUG-GAGUCC- -5'
28767 5' -53.3 NC_006146.1 + 44760 0.68 0.944077
Target:  5'- cGGGCUCucgGgggAGAGGGUGCCgugccgggcUCAGGg -3'
miRNA:   3'- uCCCGAGca-Ca--UCUUUCGUGG---------AGUCC- -5'
28767 5' -53.3 NC_006146.1 + 169138 0.68 0.937484
Target:  5'- cGGGGCcgcgCGUGgggauggccggcgGGAGgggccGGCGCCUgCAGGg -3'
miRNA:   3'- -UCCCGa---GCACa------------UCUU-----UCGUGGA-GUCC- -5'
28767 5' -53.3 NC_006146.1 + 168206 0.68 0.937484
Target:  5'- cGGGGCcgcgCGUGgggauggccggcgGGAGgggccGGCGCCUgCAGGg -3'
miRNA:   3'- -UCCCGa---GCACa------------UCUU-----UCGUGGA-GUCC- -5'
28767 5' -53.3 NC_006146.1 + 167274 0.68 0.937484
Target:  5'- cGGGGCcgcgCGUGgggauggccggcgGGAGgggccGGCGCCUgCAGGg -3'
miRNA:   3'- -UCCCGa---GCACa------------UCUU-----UCGUGGA-GUCC- -5'
28767 5' -53.3 NC_006146.1 + 51831 0.68 0.923972
Target:  5'- cGGGGCg-GcGUGGAGGGgGgCUCGGGg -3'
miRNA:   3'- -UCCCGagCaCAUCUUUCgUgGAGUCC- -5'
28767 5' -53.3 NC_006146.1 + 137847 0.68 0.923972
Target:  5'- gGGGGCUCGggGUGGGuGGGCGuguCC-CGGGc -3'
miRNA:   3'- -UCCCGAGCa-CAUCU-UUCGU---GGaGUCC- -5'
28767 5' -53.3 NC_006146.1 + 161140 0.69 0.918335
Target:  5'- cGGGUUCccggGUAGGAAGUACUgccCGGGu -3'
miRNA:   3'- uCCCGAGca--CAUCUUUCGUGGa--GUCC- -5'
28767 5' -53.3 NC_006146.1 + 145049 0.69 0.918335
Target:  5'- cGGGCgggCGg--GGAcgGGGCugCUCGGGu -3'
miRNA:   3'- uCCCGa--GCacaUCU--UUCGugGAGUCC- -5'
28767 5' -53.3 NC_006146.1 + 148127 0.69 0.918335
Target:  5'- cGGGCgggCGg--GGAcgGGGCugCUCGGGu -3'
miRNA:   3'- uCCCGa--GCacaUCU--UUCGugGAGUCC- -5'
28767 5' -53.3 NC_006146.1 + 151205 0.69 0.918335
Target:  5'- cGGGCgggCGg--GGAcgGGGCugCUCGGGu -3'
miRNA:   3'- uCCCGa--GCacaUCU--UUCGugGAGUCC- -5'
28767 5' -53.3 NC_006146.1 + 154283 0.69 0.918335
Target:  5'- cGGGCgggCGg--GGAcgGGGCugCUCGGGu -3'
miRNA:   3'- uCCCGa--GCacaUCU--UUCGugGAGUCC- -5'
28767 5' -53.3 NC_006146.1 + 141971 0.69 0.918335
Target:  5'- cGGGCgggCGg--GGAcgGGGCugCUCGGGu -3'
miRNA:   3'- uCCCGa--GCacaUCU--UUCGugGAGUCC- -5'
28767 5' -53.3 NC_006146.1 + 145566 0.69 0.918335
Target:  5'- cGGGaaCGUGUGGAugcgcgcguAGgACUUCAGGa -3'
miRNA:   3'- uCCCgaGCACAUCUu--------UCgUGGAGUCC- -5'
28767 5' -53.3 NC_006146.1 + 157361 0.69 0.918335
Target:  5'- cGGGCgggCGg--GGAcgGGGCugCUCGGGu -3'
miRNA:   3'- uCCCGa--GCacaUCU--UUCGugGAGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.