miRNA display CGI


Results 21 - 40 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28768 3' -59 NC_006146.1 + 14810 0.66 0.764256
Target:  5'- -gAGGCCGGCCgggCCGGAggagggcacggucUCgggcccGGGGCCg -3'
miRNA:   3'- ugUCCGGUCGG---GGUCU-------------AGau----CCUCGG- -5'
28768 3' -59 NC_006146.1 + 15032 0.77 0.239418
Target:  5'- cCAGGCCcgGGcCCCCAGGUCUcGG-GCCa -3'
miRNA:   3'- uGUCCGG--UC-GGGGUCUAGAuCCuCGG- -5'
28768 3' -59 NC_006146.1 + 15317 0.75 0.316042
Target:  5'- -gAGGCCAGCCCCGGugugcccCUGGcGGGCg -3'
miRNA:   3'- ugUCCGGUCGGGGUCua-----GAUC-CUCGg -5'
28768 3' -59 NC_006146.1 + 15555 0.69 0.637879
Target:  5'- gGCGGGCCuucGUCUCGGGUCccUGGGAGg- -3'
miRNA:   3'- -UGUCCGGu--CGGGGUCUAG--AUCCUCgg -5'
28768 3' -59 NC_006146.1 + 15807 0.69 0.601729
Target:  5'- -gGGGCCAGCaagcgagaccagCCCAGAggcccgagguuGGAGCCg -3'
miRNA:   3'- ugUCCGGUCG------------GGGUCUagau-------CCUCGG- -5'
28768 3' -59 NC_006146.1 + 15961 0.92 0.025083
Target:  5'- gGCAGGCCGGUCUCGGGUCUGGGGGUCu -3'
miRNA:   3'- -UGUCCGGUCGGGGUCUAGAUCCUCGG- -5'
28768 3' -59 NC_006146.1 + 16013 0.7 0.554997
Target:  5'- -gAGGCCcuGGCCCCgcccgguggccuugGGGuagcUCUGGGAGUCa -3'
miRNA:   3'- ugUCCGG--UCGGGG--------------UCU----AGAUCCUCGG- -5'
28768 3' -59 NC_006146.1 + 17443 0.73 0.376659
Target:  5'- gGCGGGCCugucagacAGCCCU--GUCUAGG-GCCg -3'
miRNA:   3'- -UGUCCGG--------UCGGGGucUAGAUCCuCGG- -5'
28768 3' -59 NC_006146.1 + 18110 0.77 0.239418
Target:  5'- cCAGGCCcgGGcCCCCAGGUCUcGG-GCCa -3'
miRNA:   3'- uGUCCGG--UC-GGGGUCUAGAuCCuCGG- -5'
28768 3' -59 NC_006146.1 + 18885 0.69 0.601729
Target:  5'- -gGGGCCAGCaagcgagaccagCCCAGAggcccgagguuGGAGCCg -3'
miRNA:   3'- ugUCCGGUCG------------GGGUCUagau-------CCUCGG- -5'
28768 3' -59 NC_006146.1 + 18994 0.72 0.444639
Target:  5'- cCGGaGCCAGaCCCCAG---UGGGGGCCc -3'
miRNA:   3'- uGUC-CGGUC-GGGGUCuagAUCCUCGG- -5'
28768 3' -59 NC_006146.1 + 19038 0.85 0.069232
Target:  5'- gGCAGGCCgGGUCUCGGGUCUGGGGGUCu -3'
miRNA:   3'- -UGUCCGG-UCGGGGUCUAGAUCCUCGG- -5'
28768 3' -59 NC_006146.1 + 19091 0.7 0.554997
Target:  5'- -gAGGCCcuGGCCCCgcccgguggccuugGGGuagcUCUGGGAGUCa -3'
miRNA:   3'- ugUCCGG--UCGGGG--------------UCU----AGAUCCUCGG- -5'
28768 3' -59 NC_006146.1 + 20521 0.73 0.376659
Target:  5'- gGCGGGCCugucagacAGCCCU--GUCUAGG-GCCg -3'
miRNA:   3'- -UGUCCGG--------UCGGGGucUAGAUCCuCGG- -5'
28768 3' -59 NC_006146.1 + 20935 0.67 0.711595
Target:  5'- uGCAGGCCcuGGCCCCcacucccacgcCUGGGcGCCc -3'
miRNA:   3'- -UGUCCGG--UCGGGGucua-------GAUCCuCGG- -5'
28768 3' -59 NC_006146.1 + 21188 0.77 0.239418
Target:  5'- cCAGGCCcgGGcCCCCAGGUCUcGG-GCCa -3'
miRNA:   3'- uGUCCGG--UC-GGGGUCUAGAuCCuCGG- -5'
28768 3' -59 NC_006146.1 + 21962 0.69 0.601729
Target:  5'- -gGGGCCAGCaagcgagaccagCCCAGAggcccgagguuGGAGCCg -3'
miRNA:   3'- ugUCCGGUCG------------GGGUCUagau-------CCUCGG- -5'
28768 3' -59 NC_006146.1 + 22116 0.85 0.069232
Target:  5'- gGCAGGCCgGGUCUCGGGUCUGGGGGUCu -3'
miRNA:   3'- -UGUCCGG-UCGGGGUCUAGAUCCUCGG- -5'
28768 3' -59 NC_006146.1 + 22169 0.7 0.554997
Target:  5'- -gAGGCCcuGGCCCCgcccgguggccuugGGGuagcUCUGGGAGUCa -3'
miRNA:   3'- ugUCCGG--UCGGGG--------------UCU----AGAUCCUCGG- -5'
28768 3' -59 NC_006146.1 + 23599 0.73 0.376659
Target:  5'- gGCGGGCCugucagacAGCCCU--GUCUAGG-GCCg -3'
miRNA:   3'- -UGUCCGG--------UCGGGGucUAGAUCCuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.