miRNA display CGI


Results 21 - 40 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28768 5' -63.2 NC_006146.1 + 16886 0.66 0.616195
Target:  5'- -gGCCCCCCucaGCuugucuccccaccgGGucCAUCAGGCCg -3'
miRNA:   3'- caCGGGGGGuc-CG--------------CCu-GUAGUCCGGg -5'
28768 5' -63.2 NC_006146.1 + 29197 0.66 0.616195
Target:  5'- -gGCCCCCCucaGCuugucuccccaccgGGucCAUCAGGCCg -3'
miRNA:   3'- caCGGGGGGuc-CG--------------CCu-GUAGUCCGGg -5'
28768 5' -63.2 NC_006146.1 + 13808 0.66 0.616195
Target:  5'- -gGCCCCCCucaGCuugucuccccaccgGGucCAUCAGGCCg -3'
miRNA:   3'- caCGGGGGGuc-CG--------------CCu-GUAGUCCGGg -5'
28768 5' -63.2 NC_006146.1 + 26119 0.66 0.616195
Target:  5'- -gGCCCCCCucaGCuugucuccccaccgGGucCAUCAGGCCg -3'
miRNA:   3'- caCGGGGGGuc-CG--------------CCu-GUAGUCCGGg -5'
28768 5' -63.2 NC_006146.1 + 19963 0.66 0.616195
Target:  5'- -gGCCCCCCucaGCuugucuccccaccgGGucCAUCAGGCCg -3'
miRNA:   3'- caCGGGGGGuc-CG--------------CCu-GUAGUCCGGg -5'
28768 5' -63.2 NC_006146.1 + 23041 0.66 0.616195
Target:  5'- -gGCCCCCCucaGCuugucuccccaccgGGucCAUCAGGCCg -3'
miRNA:   3'- caCGGGGGGuc-CG--------------CCu-GUAGUCCGGg -5'
28768 5' -63.2 NC_006146.1 + 10109 0.66 0.610368
Target:  5'- -aGUCCCUgcuggaggauuucaaGGGCuaccugGGAUGUCAGGCCCu -3'
miRNA:   3'- caCGGGGGg--------------UCCG------CCUGUAGUCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 13251 0.66 0.609398
Target:  5'- cUGUCCUCCAGGgGGAacCAggggacCGGcGCCCc -3'
miRNA:   3'- cACGGGGGGUCCgCCU--GUa-----GUC-CGGG- -5'
28768 5' -63.2 NC_006146.1 + 28641 0.66 0.609398
Target:  5'- cUGUCCUCCAGGgGGAacCAggggacCGGcGCCCc -3'
miRNA:   3'- cACGGGGGGUCCgCCU--GUa-----GUC-CGGG- -5'
28768 5' -63.2 NC_006146.1 + 22485 0.66 0.609398
Target:  5'- cUGUCCUCCAGGgGGAacCAggggacCGGcGCCCc -3'
miRNA:   3'- cACGGGGGGUCCgCCU--GUa-----GUC-CGGG- -5'
28768 5' -63.2 NC_006146.1 + 99978 0.66 0.609398
Target:  5'- -aGCCCCCUgagccgcuGGGCGGugguuguugcugACAUC--GCCCa -3'
miRNA:   3'- caCGGGGGG--------UCCGCC------------UGUAGucCGGG- -5'
28768 5' -63.2 NC_006146.1 + 19407 0.66 0.609398
Target:  5'- cUGUCCUCCAGGgGGAacCAggggacCGGcGCCCc -3'
miRNA:   3'- cACGGGGGGUCCgCCU--GUa-----GUC-CGGG- -5'
28768 5' -63.2 NC_006146.1 + 96266 0.66 0.609398
Target:  5'- cGUGgCCUacuaCAGGgGGcgccGCAUCAGGCUg -3'
miRNA:   3'- -CACgGGGg---GUCCgCC----UGUAGUCCGGg -5'
28768 5' -63.2 NC_006146.1 + 50539 0.66 0.609398
Target:  5'- -aGCCgcuccaggUCCCGGGUGGGCAccugCAGGUuuCCa -3'
miRNA:   3'- caCGG--------GGGGUCCGCCUGUa---GUCCG--GG- -5'
28768 5' -63.2 NC_006146.1 + 49837 0.66 0.609398
Target:  5'- cGUGUgCCgCAGGCGGGuCAggAGGUCg -3'
miRNA:   3'- -CACGgGGgGUCCGCCU-GUagUCCGGg -5'
28768 5' -63.2 NC_006146.1 + 108298 0.66 0.609398
Target:  5'- -aGCUCCCgCucauugccugcGGCGGACGccauuUCGGGCCa -3'
miRNA:   3'- caCGGGGG-Gu----------CCGCCUGU-----AGUCCGGg -5'
28768 5' -63.2 NC_006146.1 + 25563 0.66 0.609398
Target:  5'- cUGUCCUCCAGGgGGAacCAggggacCGGcGCCCc -3'
miRNA:   3'- cACGGGGGGUCCgCCU--GUa-----GUC-CGGG- -5'
28768 5' -63.2 NC_006146.1 + 129309 0.66 0.609398
Target:  5'- -aGCCCCCCGGGCcucuccgccucGGcCAgccagUAGGCggCCg -3'
miRNA:   3'- caCGGGGGGUCCG-----------CCuGUa----GUCCG--GG- -5'
28768 5' -63.2 NC_006146.1 + 16329 0.66 0.609398
Target:  5'- cUGUCCUCCAGGgGGAacCAggggacCGGcGCCCc -3'
miRNA:   3'- cACGGGGGGUCCgCCU--GUa-----GUC-CGGG- -5'
28768 5' -63.2 NC_006146.1 + 53884 0.66 0.609398
Target:  5'- -cGCCCCCguaGGGCGuagcccAgGUCcaGGGCCCg -3'
miRNA:   3'- caCGGGGGg--UCCGCc-----UgUAG--UCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.