miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28769 3' -60.5 NC_006146.1 + 546 0.67 0.661913
Target:  5'- gGCCUCUCCgcggGCCUCcacacguGGCCucccaggagaggGGCCGGg-- -3'
miRNA:   3'- -CGGAGAGG----CGGAG-------CCGG------------UCGGUCauc -5'
28769 3' -60.5 NC_006146.1 + 1218 0.71 0.470231
Target:  5'- cGCCUCUgCGCuCUUGGCCGGUggCAGc-- -3'
miRNA:   3'- -CGGAGAgGCG-GAGCCGGUCG--GUCauc -5'
28769 3' -60.5 NC_006146.1 + 1477 0.67 0.661913
Target:  5'- gGCCUCUCCgcggGCCUCcacacguGGCCucccaggagaggGGCCGGg-- -3'
miRNA:   3'- -CGGAGAGG----CGGAG-------CCGG------------UCGGUCauc -5'
28769 3' -60.5 NC_006146.1 + 2409 0.67 0.661913
Target:  5'- gGCCUCUCCgcggGCCUCcacacguGGCCucccaggagaggGGCCGGg-- -3'
miRNA:   3'- -CGGAGAGG----CGGAG-------CCGG------------UCGGUCauc -5'
28769 3' -60.5 NC_006146.1 + 3341 0.67 0.661913
Target:  5'- gGCCUCUCCgcggGCCUCcacacguGGCCucccaggagaggGGCCGGg-- -3'
miRNA:   3'- -CGGAGAGG----CGGAG-------CCGG------------UCGGUCauc -5'
28769 3' -60.5 NC_006146.1 + 13425 0.69 0.583989
Target:  5'- uGCCUCcCCGggucCCa-GGCCAGCCGGaGGg -3'
miRNA:   3'- -CGGAGaGGC----GGagCCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 13712 0.7 0.525957
Target:  5'- gGCCUCUCgGguCCaccaGGCCGGCCGGaGGg -3'
miRNA:   3'- -CGGAGAGgC--GGag--CCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 13991 0.66 0.730825
Target:  5'- cGCCaC-CCagGCCUCGGCCGgGCUGGUGc -3'
miRNA:   3'- -CGGaGaGG--CGGAGCCGGU-CGGUCAUc -5'
28769 3' -60.5 NC_006146.1 + 16503 0.69 0.583989
Target:  5'- uGCCUCcCCGggucCCa-GGCCAGCCGGaGGg -3'
miRNA:   3'- -CGGAGaGGC----GGagCCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 16790 0.7 0.525957
Target:  5'- gGCCUCUCgGguCCaccaGGCCGGCCGGaGGg -3'
miRNA:   3'- -CGGAGAGgC--GGag--CCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 19581 0.69 0.583989
Target:  5'- uGCCUCcCCGggucCCa-GGCCAGCCGGaGGg -3'
miRNA:   3'- -CGGAGaGGC----GGagCCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 19868 0.7 0.525957
Target:  5'- gGCCUCUCgGguCCaccaGGCCGGCCGGaGGg -3'
miRNA:   3'- -CGGAGAGgC--GGag--CCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 20407 0.67 0.692307
Target:  5'- uGCC-CUCCGCCUCcgacagggacGGCUA-CCAGgGGg -3'
miRNA:   3'- -CGGaGAGGCGGAG----------CCGGUcGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 22659 0.69 0.583989
Target:  5'- uGCCUCcCCGggucCCa-GGCCAGCCGGaGGg -3'
miRNA:   3'- -CGGAGaGGC----GGagCCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 22946 0.75 0.283492
Target:  5'- gGCCUCUCgGUCcaccaGGCCGGCCGGaGGg -3'
miRNA:   3'- -CGGAGAGgCGGag---CCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 23452 0.66 0.721294
Target:  5'- uGCCcgUCUCgGCCUacgaGGCCcuGGCC-GUGGc -3'
miRNA:   3'- -CGG--AGAGgCGGAg---CCGG--UCGGuCAUC- -5'
28769 3' -60.5 NC_006146.1 + 25737 0.69 0.583989
Target:  5'- uGCCUCcCCGggucCCa-GGCCAGCCGGaGGg -3'
miRNA:   3'- -CGGAGaGGC----GGagCCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 26023 0.7 0.525957
Target:  5'- gGCCUCUCgGguCCaccaGGCCGGCCGGaGGg -3'
miRNA:   3'- -CGGAGAGgC--GGag--CCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 28815 0.69 0.583989
Target:  5'- uGCCUCcCCGggucCCa-GGCCAGCCGGaGGg -3'
miRNA:   3'- -CGGAGaGGC----GGagCCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 29101 0.7 0.525957
Target:  5'- gGCCUCUCgGguCCaccaGGCCGGCCGGaGGg -3'
miRNA:   3'- -CGGAGAGgC--GGag--CCGGUCGGUCaUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.