miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28769 3' -60.5 NC_006146.1 + 22946 0.75 0.283492
Target:  5'- gGCCUCUCgGUCcaccaGGCCGGCCGGaGGg -3'
miRNA:   3'- -CGGAGAGgCGGag---CCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 29101 0.7 0.525957
Target:  5'- gGCCUCUCgGguCCaccaGGCCGGCCGGaGGg -3'
miRNA:   3'- -CGGAGAGgC--GGag--CCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 13425 0.69 0.583989
Target:  5'- uGCCUCcCCGggucCCa-GGCCAGCCGGaGGg -3'
miRNA:   3'- -CGGAGaGGC----GGagCCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 105827 0.66 0.758905
Target:  5'- gGCCcCUCCuGCCcCGcGCC-GCCgAGUAGa -3'
miRNA:   3'- -CGGaGAGG-CGGaGC-CGGuCGG-UCAUC- -5'
28769 3' -60.5 NC_006146.1 + 45105 0.72 0.376709
Target:  5'- gGCCauUCUCCGgCUCGGCCGgugaccGCCGGg-- -3'
miRNA:   3'- -CGG--AGAGGCgGAGCCGGU------CGGUCauc -5'
28769 3' -60.5 NC_006146.1 + 150202 0.72 0.392766
Target:  5'- aGCUUCUUaauggccuUGCgCUUGGCCAGCCAGgAGg -3'
miRNA:   3'- -CGGAGAG--------GCG-GAGCCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 55535 0.71 0.426183
Target:  5'- gGCCUCcagcUCCGCCgccacGCCGGCCAGg-- -3'
miRNA:   3'- -CGGAG----AGGCGGagc--CGGUCGGUCauc -5'
28769 3' -60.5 NC_006146.1 + 156891 0.71 0.433931
Target:  5'- uGCC-CUCCGCCUuccagcaccagccCGGCCgaGGCCugGGUGGc -3'
miRNA:   3'- -CGGaGAGGCGGA-------------GCCGG--UCGG--UCAUC- -5'
28769 3' -60.5 NC_006146.1 + 43322 0.7 0.507077
Target:  5'- gGCCggcgCgGCCUCGGCCgcccagGGCCAGcAGg -3'
miRNA:   3'- -CGGaga-GgCGGAGCCGG------UCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 26023 0.7 0.525957
Target:  5'- gGCCUCUCgGguCCaccaGGCCGGCCGGaGGg -3'
miRNA:   3'- -CGGAGAGgC--GGag--CCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 13712 0.7 0.525957
Target:  5'- gGCCUCUCgGguCCaccaGGCCGGCCGGaGGg -3'
miRNA:   3'- -CGGAGAGgC--GGag--CCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 1218 0.71 0.470231
Target:  5'- cGCCUCUgCGCuCUUGGCCGGUggCAGc-- -3'
miRNA:   3'- -CGGAGAgGCG-GAGCCGGUCG--GUCauc -5'
28769 3' -60.5 NC_006146.1 + 50339 0.75 0.283492
Target:  5'- uGCCaUCcgCgGCCUCGGCCAGCCug-GGg -3'
miRNA:   3'- -CGG-AGa-GgCGGAGCCGGUCGGucaUC- -5'
28769 3' -60.5 NC_006146.1 + 16790 0.7 0.525957
Target:  5'- gGCCUCUCgGguCCaccaGGCCGGCCGGaGGg -3'
miRNA:   3'- -CGGAGAGgC--GGag--CCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 46317 0.74 0.324083
Target:  5'- cCCUCUUCcUCUCGGCCgggcuucugaccAGCCGGUAGg -3'
miRNA:   3'- cGGAGAGGcGGAGCCGG------------UCGGUCAUC- -5'
28769 3' -60.5 NC_006146.1 + 67215 0.71 0.443512
Target:  5'- gGCCgg-UCGCCU-GGCCGGCCAGg-- -3'
miRNA:   3'- -CGGagaGGCGGAgCCGGUCGGUCauc -5'
28769 3' -60.5 NC_006146.1 + 19868 0.7 0.525957
Target:  5'- gGCCUCUCgGguCCaccaGGCCGGCCGGaGGg -3'
miRNA:   3'- -CGGAGAGgC--GGag--CCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 47878 0.69 0.535496
Target:  5'- aCCUgggCCGCCUCGGCCucGGUCAGc-- -3'
miRNA:   3'- cGGAga-GGCGGAGCCGG--UCGGUCauc -5'
28769 3' -60.5 NC_006146.1 + 111576 0.73 0.353466
Target:  5'- uGCCgUCaacaCCGCCagccucUCGGCCAGCCAGg-- -3'
miRNA:   3'- -CGG-AGa---GGCGG------AGCCGGUCGGUCauc -5'
28769 3' -60.5 NC_006146.1 + 53175 0.71 0.426183
Target:  5'- gGCCggaaggCUCgGCCUCGGCCccGGCCuugGGg -3'
miRNA:   3'- -CGGa-----GAGgCGGAGCCGG--UCGGucaUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.