miRNA display CGI


Results 21 - 40 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28769 3' -60.5 NC_006146.1 + 58160 0.67 0.702027
Target:  5'- gGCUUCUgCGCCUCGaCCAccuGCCuGUAc -3'
miRNA:   3'- -CGGAGAgGCGGAGCcGGU---CGGuCAUc -5'
28769 3' -60.5 NC_006146.1 + 107857 0.67 0.692307
Target:  5'- uGCgUCUCCGCuCUaGGCCAGUgGuGUAa -3'
miRNA:   3'- -CGgAGAGGCG-GAgCCGGUCGgU-CAUc -5'
28769 3' -60.5 NC_006146.1 + 62836 0.67 0.692307
Target:  5'- cCCUggCCGCCgUGGCCAGgCCGG-AGg -3'
miRNA:   3'- cGGAgaGGCGGaGCCGGUC-GGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 80271 0.67 0.692307
Target:  5'- cGCCUCccaaaccacccUCCcuuuuuaccacuGCCUCGGCCA-CCAG-AGg -3'
miRNA:   3'- -CGGAG-----------AGG------------CGGAGCCGGUcGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 61718 0.67 0.692307
Target:  5'- aGCC-CUCUGUCUgGGCCucagacuaagGGCCGGg-- -3'
miRNA:   3'- -CGGaGAGGCGGAgCCGG----------UCGGUCauc -5'
28769 3' -60.5 NC_006146.1 + 55752 0.67 0.692307
Target:  5'- aUCUCcaCCGCCcggCGGCgGGCCAGg-- -3'
miRNA:   3'- cGGAGa-GGCGGa--GCCGgUCGGUCauc -5'
28769 3' -60.5 NC_006146.1 + 20407 0.67 0.692307
Target:  5'- uGCC-CUCCGCCUCcgacagggacGGCUA-CCAGgGGg -3'
miRNA:   3'- -CGGaGAGGCGGAG----------CCGGUcGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 106635 0.67 0.672735
Target:  5'- uGCCgCagCGCCUgcugCGGCCGGCUGGUcAGg -3'
miRNA:   3'- -CGGaGagGCGGA----GCCGGUCGGUCA-UC- -5'
28769 3' -60.5 NC_006146.1 + 2409 0.67 0.661913
Target:  5'- gGCCUCUCCgcggGCCUCcacacguGGCCucccaggagaggGGCCGGg-- -3'
miRNA:   3'- -CGGAGAGG----CGGAG-------CCGG------------UCGGUCauc -5'
28769 3' -60.5 NC_006146.1 + 1477 0.67 0.661913
Target:  5'- gGCCUCUCCgcggGCCUCcacacguGGCCucccaggagaggGGCCGGg-- -3'
miRNA:   3'- -CGGAGAGG----CGGAG-------CCGG------------UCGGUCauc -5'
28769 3' -60.5 NC_006146.1 + 546 0.67 0.661913
Target:  5'- gGCCUCUCCgcggGCCUCcacacguGGCCucccaggagaggGGCCGGg-- -3'
miRNA:   3'- -CGGAGAGG----CGGAG-------CCGG------------UCGGUCauc -5'
28769 3' -60.5 NC_006146.1 + 3341 0.67 0.661913
Target:  5'- gGCCUCUCCgcggGCCUCcacacguGGCCucccaggagaggGGCCGGg-- -3'
miRNA:   3'- -CGGAGAGG----CGGAG-------CCGG------------UCGGUCauc -5'
28769 3' -60.5 NC_006146.1 + 157161 0.67 0.653039
Target:  5'- cGgCUCUCCcgggcuGCCggggucccucCGGCCGGCCuGGUGGa -3'
miRNA:   3'- -CgGAGAGG------CGGa---------GCCGGUCGG-UCAUC- -5'
28769 3' -60.5 NC_006146.1 + 154083 0.67 0.653039
Target:  5'- cGgCUCUCCcgggcuGCCggggucccucCGGCCGGCCuGGUGGa -3'
miRNA:   3'- -CgGAGAGG------CGGa---------GCCGGUCGG-UCAUC- -5'
28769 3' -60.5 NC_006146.1 + 156094 0.67 0.653039
Target:  5'- cCCUcCUCCgGCC-CGGCCGGCCu---- -3'
miRNA:   3'- cGGA-GAGG-CGGaGCCGGUCGGucauc -5'
28769 3' -60.5 NC_006146.1 + 141771 0.67 0.653039
Target:  5'- cGgCUCUCCcgggcuGCCggggucccucCGGCCGGCCuGGUGGa -3'
miRNA:   3'- -CgGAGAGG------CGGa---------GCCGGUCGG-UCAUC- -5'
28769 3' -60.5 NC_006146.1 + 144849 0.67 0.653039
Target:  5'- cGgCUCUCCcgggcuGCCggggucccucCGGCCGGCCuGGUGGa -3'
miRNA:   3'- -CgGAGAGG------CGGa---------GCCGGUCGG-UCAUC- -5'
28769 3' -60.5 NC_006146.1 + 147927 0.67 0.653039
Target:  5'- cGgCUCUCCcgggcuGCCggggucccucCGGCCGGCCuGGUGGa -3'
miRNA:   3'- -CgGAGAGG------CGGa---------GCCGGUCGG-UCAUC- -5'
28769 3' -60.5 NC_006146.1 + 151005 0.67 0.653039
Target:  5'- cGgCUCUCCcgggcuGCCggggucccucCGGCCGGCCuGGUGGa -3'
miRNA:   3'- -CgGAGAGG------CGGa---------GCCGGUCGG-UCAUC- -5'
28769 3' -60.5 NC_006146.1 + 50399 0.68 0.643164
Target:  5'- cGCggCUCgCGuCCUCGGCC-GCCAGg-- -3'
miRNA:   3'- -CGgaGAG-GC-GGAGCCGGuCGGUCauc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.