miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28769 5' -51.3 NC_006146.1 + 129354 1.14 0.004568
Target:  5'- uGGCUUCUAAAGAGAGAGCCGGAGAGGg -3'
miRNA:   3'- -CCGAAGAUUUCUCUCUCGGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 23952 0.82 0.415127
Target:  5'- cGGCgacuuuccccccgggUCggguGGGGGAGCCGGAGAGGg -3'
miRNA:   3'- -CCGa--------------AGauuuCUCUCUCGGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 14791 0.79 0.515326
Target:  5'- uGGCggCUGAGGGGAaggagaggccggccGGGCCGGAGgAGGg -3'
miRNA:   3'- -CCGaaGAUUUCUCU--------------CUCGGCCUC-UCC- -5'
28769 5' -51.3 NC_006146.1 + 155250 0.78 0.60417
Target:  5'- gGGCUUgUGGGGAcacaugggcucguggGAGAGgCGGGGAGGa -3'
miRNA:   3'- -CCGAAgAUUUCU---------------CUCUCgGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 149094 0.78 0.60417
Target:  5'- gGGCUUgUGGGGAcacaugggcucguggGAGAGgCGGGGAGGa -3'
miRNA:   3'- -CCGAAgAUUUCU---------------CUCUCgGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 146016 0.78 0.60417
Target:  5'- gGGCUUgUGGGGAcacaugggcucguggGAGAGgCGGGGAGGa -3'
miRNA:   3'- -CCGAAgAUUUCU---------------CUCUCgGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 152172 0.78 0.60417
Target:  5'- gGGCUUgUGGGGAcacaugggcucguggGAGAGgCGGGGAGGa -3'
miRNA:   3'- -CCGAAgAUUUCU---------------CUCUCgGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 142938 0.78 0.60417
Target:  5'- gGGCUUgUGGGGAcacaugggcucguggGAGAGgCGGGGAGGa -3'
miRNA:   3'- -CCGAAgAUUUCU---------------CUCUCgGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 158329 0.78 0.60417
Target:  5'- gGGCUUgUGGGGAcacaugggcucguggGAGAGgCGGGGAGGa -3'
miRNA:   3'- -CCGAAgAUUUCU---------------CUCUCgGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 137380 0.77 0.620824
Target:  5'- gGGCacaacCUAGGGAGGGAgGCCGG-GAGGg -3'
miRNA:   3'- -CCGaa---GAUUUCUCUCU-CGGCCuCUCC- -5'
28769 5' -51.3 NC_006146.1 + 169173 0.77 0.620824
Target:  5'- cGGCgcCUGcAGGGGGGGCCGGcGGGGc -3'
miRNA:   3'- -CCGaaGAUuUCUCUCUCGGCCuCUCC- -5'
28769 5' -51.3 NC_006146.1 + 168241 0.77 0.620824
Target:  5'- cGGCgcCUGcAGGGGGGGCCGGcGGGGc -3'
miRNA:   3'- -CCGaaGAUuUCUCUCUCGGCCuCUCC- -5'
28769 5' -51.3 NC_006146.1 + 167309 0.77 0.620824
Target:  5'- cGGCgcCUGcAGGGGGGGCCGGcGGGGc -3'
miRNA:   3'- -CCGaaGAUuUCUCUCUCGGCCuCUCC- -5'
28769 5' -51.3 NC_006146.1 + 150814 0.75 0.734049
Target:  5'- gGGCcUCggGGAGGGAGAGa-GGAGGGGg -3'
miRNA:   3'- -CCGaAGa-UUUCUCUCUCggCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 147736 0.75 0.734049
Target:  5'- gGGCcUCggGGAGGGAGAGa-GGAGGGGg -3'
miRNA:   3'- -CCGaAGa-UUUCUCUCUCggCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 154037 0.75 0.734049
Target:  5'- gGGCc---GGGGAGGGAGgCGGGGAGGa -3'
miRNA:   3'- -CCGaagaUUUCUCUCUCgGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 144659 0.75 0.734049
Target:  5'- gGGCcUCggGGAGGGAGAGa-GGAGGGGg -3'
miRNA:   3'- -CCGaAGa-UUUCUCUCUCggCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 150959 0.75 0.734049
Target:  5'- gGGCc---GGGGAGGGAGgCGGGGAGGa -3'
miRNA:   3'- -CCGaagaUUUCUCUCUCgGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 144803 0.75 0.734049
Target:  5'- gGGCc---GGGGAGGGAGgCGGGGAGGa -3'
miRNA:   3'- -CCGaagaUUUCUCUCUCgGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 157115 0.75 0.734049
Target:  5'- gGGCc---GGGGAGGGAGgCGGGGAGGa -3'
miRNA:   3'- -CCGaagaUUUCUCUCUCgGCCUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.