miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28769 5' -51.3 NC_006146.1 + 2 0.69 0.971866
Target:  5'- gGGCUUCgucacgcAAGGGuGAuuUCGGAGAGGg -3'
miRNA:   3'- -CCGAAGau-----UUCUCuCUc-GGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 34 0.69 0.971866
Target:  5'- gGGCUUCguuacgcAAGGGuGAuuUCGGAGAGGg -3'
miRNA:   3'- -CCGAAGau-----UUCUCuCUc-GGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 98 0.69 0.971866
Target:  5'- gGGCUUCgucacgcAAGGGuGAuuUCGGAGAGGg -3'
miRNA:   3'- -CCGAAGau-----UUCUCuCUc-GGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 130 0.69 0.971866
Target:  5'- gGGCUUCgucacgcAAGGGuGAuuUCGGAGAGGg -3'
miRNA:   3'- -CCGAAGau-----UUCUCuCUc-GGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 570 0.69 0.962363
Target:  5'- uGGCcUCccAGGAGAgGGGCCGGGGGc- -3'
miRNA:   3'- -CCGaAGauUUCUCU-CUCGGCCUCUcc -5'
28769 5' -51.3 NC_006146.1 + 997 0.69 0.971866
Target:  5'- gGGCUUCgucacgcAAGGGuGAuuUCGGAGAGGg -3'
miRNA:   3'- -CCGAAGau-----UUCUCuCUc-GGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 1501 0.69 0.962363
Target:  5'- uGGCcUCccAGGAGAgGGGCCGGGGGc- -3'
miRNA:   3'- -CCGaAGauUUCUCU-CUCGGCCUCUcc -5'
28769 5' -51.3 NC_006146.1 + 1930 0.69 0.971866
Target:  5'- gGGCUUCgucacgcAAGGGuGAuuUCGGAGAGGg -3'
miRNA:   3'- -CCGAAGau-----UUCUCuCUc-GGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 2041 0.69 0.962363
Target:  5'- aGGCcUCagcgccAAGAGAGGGCCcGAGAGu -3'
miRNA:   3'- -CCGaAGau----UUCUCUCUCGGcCUCUCc -5'
28769 5' -51.3 NC_006146.1 + 2433 0.69 0.962363
Target:  5'- uGGCcUCccAGGAGAgGGGCCGGGGGc- -3'
miRNA:   3'- -CCGaAGauUUCUCU-CUCGGCCUCUcc -5'
28769 5' -51.3 NC_006146.1 + 2862 0.69 0.971866
Target:  5'- gGGCUUCgucacgcAAGGGuGAuuUCGGAGAGGg -3'
miRNA:   3'- -CCGAAGau-----UUCUCuCUc-GGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 3365 0.69 0.962363
Target:  5'- uGGCcUCccAGGAGAgGGGCCGGGGGc- -3'
miRNA:   3'- -CCGaAGauUUCUCU-CUCGGCCUCUcc -5'
28769 5' -51.3 NC_006146.1 + 14791 0.79 0.515326
Target:  5'- uGGCggCUGAGGGGAaggagaggccggccGGGCCGGAGgAGGg -3'
miRNA:   3'- -CCGaaGAUUUCUCU--------------CUCGGCCUC-UCC- -5'
28769 5' -51.3 NC_006146.1 + 15284 0.67 0.991266
Target:  5'- cGGCUgaaccggagCgagGGGGAGgaGGGGCCGGAGGc- -3'
miRNA:   3'- -CCGAa--------Ga--UUUCUC--UCUCGGCCUCUcc -5'
28769 5' -51.3 NC_006146.1 + 18970 0.72 0.882826
Target:  5'- cGGCccCUAGAGAGggcggcAGGGCCGGAGccagaccccaguGGGg -3'
miRNA:   3'- -CCGaaGAUUUCUC------UCUCGGCCUC------------UCC- -5'
28769 5' -51.3 NC_006146.1 + 23952 0.82 0.415127
Target:  5'- cGGCgacuuuccccccgggUCggguGGGGGAGCCGGAGAGGg -3'
miRNA:   3'- -CCGa--------------AGauuuCUCUCUCGGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 26167 0.73 0.85176
Target:  5'- gGGCUUaagcggcCUGGAGGGGauuaGGUCGGAGGGGg -3'
miRNA:   3'- -CCGAA-------GAUUUCUCUc---UCGGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 32168 0.68 0.983662
Target:  5'- aGGCaacCguaagGAGGGGGGGGuaGGGGGGGg -3'
miRNA:   3'- -CCGaa-Ga----UUUCUCUCUCggCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 33197 0.75 0.743983
Target:  5'- gGGCacccCcGGGGGGAG-GCCGGAGGGGg -3'
miRNA:   3'- -CCGaa--GaUUUCUCUCuCGGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 34011 0.68 0.981672
Target:  5'- aGGC----AGGGGGGGGGUCGGGGcAGGc -3'
miRNA:   3'- -CCGaagaUUUCUCUCUCGGCCUC-UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.