miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28769 5' -51.3 NC_006146.1 + 167309 0.77 0.620824
Target:  5'- cGGCgcCUGcAGGGGGGGCCGGcGGGGc -3'
miRNA:   3'- -CCGaaGAUuUCUCUCUCGGCCuCUCC- -5'
28769 5' -51.3 NC_006146.1 + 2041 0.69 0.962363
Target:  5'- aGGCcUCagcgccAAGAGAGGGCCcGAGAGu -3'
miRNA:   3'- -CCGaAGau----UUCUCUCUCGGcCUCUCc -5'
28769 5' -51.3 NC_006146.1 + 60113 0.68 0.977154
Target:  5'- uGGCgUUCUGugcaaGGGGCCGgGGGAGGg -3'
miRNA:   3'- -CCG-AAGAUuucucUCUCGGC-CUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 85892 0.66 0.995755
Target:  5'- cGCUggaaCUAGgguGAGAGAGCCGcGGGGc -3'
miRNA:   3'- cCGAa---GAUUu--CUCUCUCGGCcUCUCc -5'
28769 5' -51.3 NC_006146.1 + 51155 0.74 0.782605
Target:  5'- cGCUguagCUGucGGAGugggcuguGGAGCCGGGGAGGc -3'
miRNA:   3'- cCGAa---GAUu-UCUC--------UCUCGGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 126023 0.73 0.85256
Target:  5'- gGGCUUCUGcuGcu-GGGCCGG-GAGGg -3'
miRNA:   3'- -CCGAAGAUuuCucuCUCGGCCuCUCC- -5'
28769 5' -51.3 NC_006146.1 + 46218 0.71 0.903125
Target:  5'- aGGCUUCcu-GGAGGaaaauGaAGCCGGAGGGa -3'
miRNA:   3'- -CCGAAGauuUCUCU-----C-UCGGCCUCUCc -5'
28769 5' -51.3 NC_006146.1 + 170105 0.71 0.903125
Target:  5'- cGGCgcCgc-AGGGGGGGCCGGcGGGGc -3'
miRNA:   3'- -CCGaaGauuUCUCUCUCGGCCuCUCC- -5'
28769 5' -51.3 NC_006146.1 + 90225 0.7 0.95083
Target:  5'- aGGCggugGAGGAGGcAGCCgagGGAGAGGc -3'
miRNA:   3'- -CCGaagaUUUCUCUcUCGG---CCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 166869 0.69 0.958751
Target:  5'- cGGCgg--GAGGGGGGAGCggaGGGcGAGGa -3'
miRNA:   3'- -CCGaagaUUUCUCUCUCGg--CCU-CUCC- -5'
28769 5' -51.3 NC_006146.1 + 43755 0.69 0.954908
Target:  5'- cGGCggacagaGAGGAGuGGGCCGcAGAGGg -3'
miRNA:   3'- -CCGaaga---UUUCUCuCUCGGCcUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 52003 0.7 0.932096
Target:  5'- cGUUUCggacGAGAGAGAGC--GAGAGGg -3'
miRNA:   3'- cCGAAGau--UUCUCUCUCGgcCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 168241 0.77 0.620824
Target:  5'- cGGCgcCUGcAGGGGGGGCCGGcGGGGc -3'
miRNA:   3'- -CCGaaGAUuUCUCUCUCGGCCuCUCC- -5'
28769 5' -51.3 NC_006146.1 + 40995 0.69 0.958751
Target:  5'- uGGCccugUCUggucagggcGAAGAGccgggcgucAGAGCCGuGGGAGGa -3'
miRNA:   3'- -CCGa---AGA---------UUUCUC---------UCUCGGC-CUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 169173 0.77 0.620824
Target:  5'- cGGCgcCUGcAGGGGGGGCCGGcGGGGc -3'
miRNA:   3'- -CCGaaGAUuUCUCUCUCGGCCuCUCC- -5'
28769 5' -51.3 NC_006146.1 + 44626 0.71 0.915453
Target:  5'- uGGCca-UGGGGuG-GAGCUGGAGAGGc -3'
miRNA:   3'- -CCGaagAUUUCuCuCUCGGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 42290 0.69 0.958751
Target:  5'- uGGCggggagGAGGAGcgGGAGCCGGAgugcccugcGAGGu -3'
miRNA:   3'- -CCGaaga--UUUCUC--UCUCGGCCU---------CUCC- -5'
28769 5' -51.3 NC_006146.1 + 118972 0.69 0.965748
Target:  5'- aGGCcaugUCUcacgguAAGGAG-GAGCUGGGGGGa -3'
miRNA:   3'- -CCGa---AGA------UUUCUCuCUCGGCCUCUCc -5'
28769 5' -51.3 NC_006146.1 + 163198 0.75 0.753815
Target:  5'- uGGCUUCUGccccucAGAG-GAGCCGGGcAGGc -3'
miRNA:   3'- -CCGAAGAUu-----UCUCuCUCGGCCUcUCC- -5'
28769 5' -51.3 NC_006146.1 + 65649 0.72 0.868133
Target:  5'- cGGCUcUCUGguGGGAGAGAGaaaaGGGGAGa -3'
miRNA:   3'- -CCGA-AGAU--UUCUCUCUCgg--CCUCUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.