Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2877 | 3' | -56.3 | NC_001493.1 | + | 133059 | 0.67 | 0.883734 |
Target: 5'- aCCGAGUCUCGA-GAcccUCGuGGacgaaUUCUCCa -3' miRNA: 3'- -GGCUCAGAGCUgCU---AGC-CC-----AAGGGGc -5' |
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2877 | 3' | -56.3 | NC_001493.1 | + | 131816 | 0.72 | 0.633386 |
Target: 5'- -gGAGUCUCGAgCGGUCGag--CCCCGg -3' miRNA: 3'- ggCUCAGAGCU-GCUAGCccaaGGGGC- -5' |
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2877 | 3' | -56.3 | NC_001493.1 | + | 126367 | 0.76 | 0.389895 |
Target: 5'- cCCGGGgagCUCGcGCGAUCGGGcgcgUCCCGa -3' miRNA: 3'- -GGCUCa--GAGC-UGCUAGCCCaa--GGGGC- -5' |
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2877 | 3' | -56.3 | NC_001493.1 | + | 125506 | 0.66 | 0.926026 |
Target: 5'- gCCGAG-CUCGACGucccCGcGGUUCgagcgcuggucuCCCGu -3' miRNA: 3'- -GGCUCaGAGCUGCua--GC-CCAAG------------GGGC- -5' |
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2877 | 3' | -56.3 | NC_001493.1 | + | 125362 | 0.66 | 0.926026 |
Target: 5'- gUCGAG-CUCGGCG--CGGGcgcaUCCCUGc -3' miRNA: 3'- -GGCUCaGAGCUGCuaGCCCa---AGGGGC- -5' |
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2877 | 3' | -56.3 | NC_001493.1 | + | 125158 | 0.74 | 0.534258 |
Target: 5'- uCCGAGUCggUGACGG-CGGGUgaCUCCGg -3' miRNA: 3'- -GGCUCAGa-GCUGCUaGCCCAa-GGGGC- -5' |
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2877 | 3' | -56.3 | NC_001493.1 | + | 124647 | 0.7 | 0.740872 |
Target: 5'- cCCGGGUCUUuugcGCGGUCaacgggagccgcgGGGUcaUCCCCGc -3' miRNA: 3'- -GGCUCAGAGc---UGCUAG-------------CCCA--AGGGGC- -5' |
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2877 | 3' | -56.3 | NC_001493.1 | + | 123406 | 1.12 | 0.002181 |
Target: 5'- aCCGAGUCUCGACGAUCGGGUUCCCCGg -3' miRNA: 3'- -GGCUCAGAGCUGCUAGCCCAAGGGGC- -5' |
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2877 | 3' | -56.3 | NC_001493.1 | + | 120179 | 0.78 | 0.327901 |
Target: 5'- aCCGAG-CUCGACGAUCGGc-UCuCCCGc -3' miRNA: 3'- -GGCUCaGAGCUGCUAGCCcaAG-GGGC- -5' |
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2877 | 3' | -56.3 | NC_001493.1 | + | 119341 | 0.66 | 0.913349 |
Target: 5'- gCGAGgcgCGGCGGUuucgaggugaugugCGGGUccauccuccUCCCCGg -3' miRNA: 3'- gGCUCagaGCUGCUA--------------GCCCA---------AGGGGC- -5' |
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2877 | 3' | -56.3 | NC_001493.1 | + | 112547 | 0.69 | 0.788123 |
Target: 5'- gCCGAGUCcugccagcgccUCGAucuCGGUCGGGaaCCUCa -3' miRNA: 3'- -GGCUCAG-----------AGCU---GCUAGCCCaaGGGGc -5' |
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2877 | 3' | -56.3 | NC_001493.1 | + | 103892 | 0.66 | 0.909251 |
Target: 5'- gCCGAacgGUCgaacaCGGCGuacgUGaGGUUCCCCGu -3' miRNA: 3'- -GGCU---CAGa----GCUGCua--GC-CCAAGGGGC- -5' |
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2877 | 3' | -56.3 | NC_001493.1 | + | 92845 | 0.81 | 0.218067 |
Target: 5'- cUCGAGagucuccacucuauUCUCGGCGAaggagaagaagacaUCGGGUUCCCCGu -3' miRNA: 3'- -GGCUC--------------AGAGCUGCU--------------AGCCCAAGGGGC- -5' |
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2877 | 3' | -56.3 | NC_001493.1 | + | 89920 | 0.66 | 0.915071 |
Target: 5'- gUCG-GUCUgGGC-AUCGGGcUUCCaCCGa -3' miRNA: 3'- -GGCuCAGAgCUGcUAGCCC-AAGG-GGC- -5' |
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2877 | 3' | -56.3 | NC_001493.1 | + | 88128 | 0.7 | 0.751303 |
Target: 5'- uCCGAGUCUCGAuCGAUCGcuccaGGcgccgaUCCCGu -3' miRNA: 3'- -GGCUCAGAGCU-GCUAGC-----CCaa----GGGGC- -5' |
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2877 | 3' | -56.3 | NC_001493.1 | + | 83880 | 0.67 | 0.876811 |
Target: 5'- gCCGuguucGUC-CGGCGcgCGGcGcUCCCCGg -3' miRNA: 3'- -GGCu----CAGaGCUGCuaGCC-CaAGGGGC- -5' |
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2877 | 3' | -56.3 | NC_001493.1 | + | 82460 | 0.68 | 0.814355 |
Target: 5'- gCGAGacgCUCuACGAUCGGGUcgaacucguUCUCCa -3' miRNA: 3'- gGCUCa--GAGcUGCUAGCCCA---------AGGGGc -5' |
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2877 | 3' | -56.3 | NC_001493.1 | + | 69590 | 0.67 | 0.862342 |
Target: 5'- gCCGcGGcCUCGgcucguucGCGAUCGGGgacacgucccgcUUCCCCa -3' miRNA: 3'- -GGC-UCaGAGC--------UGCUAGCCC------------AAGGGGc -5' |
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2877 | 3' | -56.3 | NC_001493.1 | + | 62314 | 0.68 | 0.831062 |
Target: 5'- aCCGGGUCggUCcACGGgggcuaucagUGGGUUCUCCGg -3' miRNA: 3'- -GGCUCAG--AGcUGCUa---------GCCCAAGGGGC- -5' |
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2877 | 3' | -56.3 | NC_001493.1 | + | 58213 | 0.77 | 0.380929 |
Target: 5'- cCCGAGUCUC-ACGGUCGGGcgauguaUUUUCCGg -3' miRNA: 3'- -GGCUCAGAGcUGCUAGCCC-------AAGGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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