miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2877 5' -60.1 NC_001493.1 + 16093 0.66 0.726083
Target:  5'- -aCGGGGccGUC-CCGGG--GCUCGAc -3'
miRNA:   3'- uaGCCCCucCAGuGGCCCucUGAGCU- -5'
2877 5' -60.1 NC_001493.1 + 131648 0.66 0.726083
Target:  5'- -aCGGGGccGUC-CCGGG--GCUCGAc -3'
miRNA:   3'- uaGCCCCucCAGuGGCCCucUGAGCU- -5'
2877 5' -60.1 NC_001493.1 + 25887 0.66 0.716395
Target:  5'- uUCGGGGAaaa-ACCGGGAacCUCGAu -3'
miRNA:   3'- uAGCCCCUccagUGGCCCUcuGAGCU- -5'
2877 5' -60.1 NC_001493.1 + 113440 0.66 0.69682
Target:  5'- uUgGGaGGGGGUUGCCGGGuccguGGCUgGGc -3'
miRNA:   3'- uAgCC-CCUCCAGUGGCCCu----CUGAgCU- -5'
2877 5' -60.1 NC_001493.1 + 13504 0.66 0.686951
Target:  5'- cAUCGGGGGGGgga---GGAGGCUCGu -3'
miRNA:   3'- -UAGCCCCUCCaguggcCCUCUGAGCu -5'
2877 5' -60.1 NC_001493.1 + 129058 0.66 0.686951
Target:  5'- cAUCGGGGGGGgga---GGAGGCUCGu -3'
miRNA:   3'- -UAGCCCCUCCaguggcCCUCUGAGCu -5'
2877 5' -60.1 NC_001493.1 + 5632 0.67 0.677038
Target:  5'- -cCGGGGAGGagACCaGGGAGGaggGAa -3'
miRNA:   3'- uaGCCCCUCCagUGG-CCCUCUgagCU- -5'
2877 5' -60.1 NC_001493.1 + 121187 0.67 0.677038
Target:  5'- -cCGGGGAGGagACCaGGGAGGaggGAa -3'
miRNA:   3'- uaGCCCCUCCagUGG-CCCUCUgagCU- -5'
2877 5' -60.1 NC_001493.1 + 94529 0.67 0.66709
Target:  5'- gGUCGuGGAGGUCACCaGGAuACcCGGg -3'
miRNA:   3'- -UAGCcCCUCCAGUGGcCCUcUGaGCU- -5'
2877 5' -60.1 NC_001493.1 + 50116 0.67 0.66709
Target:  5'- cUCGGGGuccuUCACaCGGGAGAUUUGu -3'
miRNA:   3'- uAGCCCCucc-AGUG-GCCCUCUGAGCu -5'
2877 5' -60.1 NC_001493.1 + 51500 0.67 0.64712
Target:  5'- cGUCGGGGAgauGGUCACCGauguuAGAUUCa- -3'
miRNA:   3'- -UAGCCCCU---CCAGUGGCcc---UCUGAGcu -5'
2877 5' -60.1 NC_001493.1 + 87232 0.67 0.637115
Target:  5'- cUCGGGG-GGUCcaacGCgGGGGGGauaUCGGa -3'
miRNA:   3'- uAGCCCCuCCAG----UGgCCCUCUg--AGCU- -5'
2877 5' -60.1 NC_001493.1 + 24982 0.67 0.626104
Target:  5'- -gCGGGGGGGaUACUGGGAcucugugGAUUUGAg -3'
miRNA:   3'- uaGCCCCUCCaGUGGCCCU-------CUGAGCU- -5'
2877 5' -60.1 NC_001493.1 + 107575 0.68 0.567371
Target:  5'- -cCGGGGGGGUgGCCggaauccacacgGGGAGAg-CGAa -3'
miRNA:   3'- uaGCCCCUCCAgUGG------------CCCUCUgaGCU- -5'
2877 5' -60.1 NC_001493.1 + 21586 0.7 0.49971
Target:  5'- gAUCGGGauGGGGaUUACCGGGAcGcCUCGGa -3'
miRNA:   3'- -UAGCCC--CUCC-AGUGGCCCU-CuGAGCU- -5'
2877 5' -60.1 NC_001493.1 + 28070 0.7 0.4718
Target:  5'- cUCGGGGA-GUCACaGGGAGGacuaUCGGa -3'
miRNA:   3'- uAGCCCCUcCAGUGgCCCUCUg---AGCU- -5'
2877 5' -60.1 NC_001493.1 + 11303 0.71 0.435864
Target:  5'- cUCGGGGGucaucgagcccuGGUC-CCGGGAGccCUCGGu -3'
miRNA:   3'- uAGCCCCU------------CCAGuGGCCCUCu-GAGCU- -5'
2877 5' -60.1 NC_001493.1 + 126857 0.71 0.435864
Target:  5'- cUCGGGGGucaucgagcccuGGUC-CCGGGAGccCUCGGu -3'
miRNA:   3'- uAGCCCCU------------CCAGuGGCCCUCu-GAGCU- -5'
2877 5' -60.1 NC_001493.1 + 7814 1.06 0.001739
Target:  5'- aAUCGGGGAGGUCACCGGGAGACUCGAu -3'
miRNA:   3'- -UAGCCCCUCCAGUGGCCCUCUGAGCU- -5'
2877 5' -60.1 NC_001493.1 + 123368 1.06 0.001739
Target:  5'- aAUCGGGGAGGUCACCGGGAGACUCGAu -3'
miRNA:   3'- -UAGCCCCUCCAGUGGCCCUCUGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.