Results 41 - 60 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28770 | 5' | -55.9 | NC_006146.1 | + | 122321 | 0.67 | 0.884314 |
Target: 5'- uGGCCUCccugaccccCGAGGCCCCGGa--- -3' miRNA: 3'- uUUGGAGaagu-----GCUCCGGGGCCaucg -5' |
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28770 | 5' | -55.9 | NC_006146.1 | + | 30486 | 0.67 | 0.878692 |
Target: 5'- gGAACCUCUUCcugccaACG-GGCCCCaacacagAGCu -3' miRNA: 3'- -UUUGGAGAAG------UGCuCCGGGGcca----UCG- -5' |
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28770 | 5' | -55.9 | NC_006146.1 | + | 155560 | 0.68 | 0.832242 |
Target: 5'- gGAGCCgggCUcgCGCGGGGCgCCCGccaggGGCa -3' miRNA: 3'- -UUUGGa--GAa-GUGCUCCG-GGGCca---UCG- -5' |
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28770 | 5' | -55.9 | NC_006146.1 | + | 167184 | 0.68 | 0.848526 |
Target: 5'- gAGGCCggcgCgcgCcCGGGGUCCCGGggGGCg -3' miRNA: 3'- -UUUGGa---Gaa-GuGCUCCGGGGCCa-UCG- -5' |
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28770 | 5' | -55.9 | NC_006146.1 | + | 169048 | 0.68 | 0.848526 |
Target: 5'- gAGGCCggcgCgcgCcCGGGGUCCCGGggGGCg -3' miRNA: 3'- -UUUGGa---Gaa-GuGCUCCGGGGCCa-UCG- -5' |
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28770 | 5' | -55.9 | NC_006146.1 | + | 121337 | 0.68 | 0.840479 |
Target: 5'- uGGCCUCagCGCuGGGCCUCaGUGGUg -3' miRNA: 3'- uUUGGAGaaGUGcUCCGGGGcCAUCG- -5' |
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28770 | 5' | -55.9 | NC_006146.1 | + | 168116 | 0.68 | 0.848526 |
Target: 5'- gAGGCCggcgCgcgCcCGGGGUCCCGGggGGCg -3' miRNA: 3'- -UUUGGa---Gaa-GuGCUCCGGGGCCa-UCG- -5' |
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28770 | 5' | -55.9 | NC_006146.1 | + | 117654 | 0.68 | 0.840479 |
Target: 5'- --uCUUgUUCACGAuccaGGCCuccaCCGGUAGCu -3' miRNA: 3'- uuuGGAgAAGUGCU----CCGG----GGCCAUCG- -5' |
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28770 | 5' | -55.9 | NC_006146.1 | + | 162376 | 0.68 | 0.823824 |
Target: 5'- gGAGCCcCUUgGCGcgcccgcgcccGGGaCCCCGGUGGg -3' miRNA: 3'- -UUUGGaGAAgUGC-----------UCC-GGGGCCAUCg -5' |
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28770 | 5' | -55.9 | NC_006146.1 | + | 48565 | 0.68 | 0.840479 |
Target: 5'- cGACCUUggaaUCAucCGGGGCCUCGGgGGUc -3' miRNA: 3'- uUUGGAGa---AGU--GCUCCGGGGCCaUCG- -5' |
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28770 | 5' | -55.9 | NC_006146.1 | + | 116449 | 0.68 | 0.815231 |
Target: 5'- uGGACgCggUUCGCGAGGUCUCGGgcGUa -3' miRNA: 3'- -UUUG-GagAAGUGCUCCGGGGCCauCG- -5' |
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28770 | 5' | -55.9 | NC_006146.1 | + | 89365 | 0.68 | 0.815231 |
Target: 5'- ---aCUCUUC-CGAGGCCCgaGGUcucguggugGGCa -3' miRNA: 3'- uuugGAGAAGuGCUCCGGGg-CCA---------UCG- -5' |
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28770 | 5' | -55.9 | NC_006146.1 | + | 47746 | 0.68 | 0.848526 |
Target: 5'- gGGGCCUCcUCGCGc-GCCCUGGcgAGUa -3' miRNA: 3'- -UUUGGAGaAGUGCucCGGGGCCa-UCG- -5' |
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28770 | 5' | -55.9 | NC_006146.1 | + | 169980 | 0.68 | 0.848526 |
Target: 5'- gAGGCCggcgCgcgCcCGGGGUCCCGGggGGCg -3' miRNA: 3'- -UUUGGa---Gaa-GuGCUCCGGGGCCa-UCG- -5' |
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28770 | 5' | -55.9 | NC_006146.1 | + | 76733 | 0.68 | 0.848526 |
Target: 5'- gAGGCCgacagCUUCgugGAGGCCCaCGGgcacgAGCa -3' miRNA: 3'- -UUUGGa----GAAGug-CUCCGGG-GCCa----UCG- -5' |
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28770 | 5' | -55.9 | NC_006146.1 | + | 28079 | 0.68 | 0.832242 |
Target: 5'- uGGGCUUCggggcaUUCuuGAGGCCCgGGUGGg -3' miRNA: 3'- -UUUGGAG------AAGugCUCCGGGgCCAUCg -5' |
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28770 | 5' | -55.9 | NC_006146.1 | + | 95926 | 0.68 | 0.835559 |
Target: 5'- uGGCCccgCUUCugGAcucuguacuGGCCCCGGUucuggacucuguacuGGCc -3' miRNA: 3'- uUUGGa--GAAGugCU---------CCGGGGCCA---------------UCG- -5' |
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28770 | 5' | -55.9 | NC_006146.1 | + | 51914 | 0.69 | 0.779283 |
Target: 5'- gGGGCCUCcgaggCAcCGAcgggcGGCCCCGGU-GCg -3' miRNA: 3'- -UUUGGAGaa---GU-GCU-----CCGGGGCCAuCG- -5' |
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28770 | 5' | -55.9 | NC_006146.1 | + | 44934 | 0.69 | 0.777425 |
Target: 5'- uGAACCUCUcguggccaggggCGCgggGAGGCCCCGGgGGa -3' miRNA: 3'- -UUUGGAGAa-----------GUG---CUCCGGGGCCaUCg -5' |
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28770 | 5' | -55.9 | NC_006146.1 | + | 128255 | 0.69 | 0.769944 |
Target: 5'- -uACCUCUgggccCACuacguGAGGCCCaCGGcGGCg -3' miRNA: 3'- uuUGGAGAa----GUG-----CUCCGGG-GCCaUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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