miRNA display CGI


Results 21 - 40 of 312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28771 3' -59 NC_006146.1 + 95311 0.66 0.838013
Target:  5'- cCCCCCuugauCGGGACgG-CGGCCUCAUu- -3'
miRNA:   3'- -GGGGGc----GUUCUGgUgGCCGGAGUAcg -5'
28771 3' -59 NC_006146.1 + 78433 0.66 0.838013
Target:  5'- uCCCaCCGCGAGACUuuagaaACaUGGCCaUCccgGCg -3'
miRNA:   3'- -GGG-GGCGUUCUGG------UG-GCCGG-AGua-CG- -5'
28771 3' -59 NC_006146.1 + 123988 0.66 0.838013
Target:  5'- gUCCCCGUgcGACCcccucaacCCGGCCUaCGUc- -3'
miRNA:   3'- -GGGGGCGuuCUGGu-------GGCCGGA-GUAcg -5'
28771 3' -59 NC_006146.1 + 115336 0.66 0.838013
Target:  5'- aCCCCGgacucggucauCGAGGCCuucCUGGCCggCGUGg -3'
miRNA:   3'- gGGGGC-----------GUUCUGGu--GGCCGGa-GUACg -5'
28771 3' -59 NC_006146.1 + 149498 0.66 0.83722
Target:  5'- aCCCUGCccucucuGAGGuCCGCauaGGCCUCGUu- -3'
miRNA:   3'- gGGGGCG-------UUCU-GGUGg--CCGGAGUAcg -5'
28771 3' -59 NC_006146.1 + 66362 0.66 0.830009
Target:  5'- gCCCCUgguGCAGGGCUuucaaGGCCUCAa-- -3'
miRNA:   3'- -GGGGG---CGUUCUGGugg--CCGGAGUacg -5'
28771 3' -59 NC_006146.1 + 13979 0.66 0.830009
Target:  5'- -gCCCGUcAGcgccGCCACCcaGGCCUCGgccggGCu -3'
miRNA:   3'- ggGGGCGuUC----UGGUGG--CCGGAGUa----CG- -5'
28771 3' -59 NC_006146.1 + 125486 0.66 0.830009
Target:  5'- aCCCgGcCGGGGCCucgcGCUGGCCcaccgaCGUGCu -3'
miRNA:   3'- gGGGgC-GUUCUGG----UGGCCGGa-----GUACG- -5'
28771 3' -59 NC_006146.1 + 44469 0.66 0.830009
Target:  5'- aUCCCaCGCAGGAa-GCgUGGCCUgugcCGUGCu -3'
miRNA:   3'- -GGGG-GCGUUCUggUG-GCCGGA----GUACG- -5'
28771 3' -59 NC_006146.1 + 32935 0.66 0.830009
Target:  5'- gCCCCCGgGAGGCC--CGGCCgCGa-- -3'
miRNA:   3'- -GGGGGCgUUCUGGugGCCGGaGUacg -5'
28771 3' -59 NC_006146.1 + 68092 0.66 0.830009
Target:  5'- gCCCCCGCGcgauccagguGGGCgGCCaGCCgguccGCg -3'
miRNA:   3'- -GGGGGCGU----------UCUGgUGGcCGGagua-CG- -5'
28771 3' -59 NC_006146.1 + 94164 0.66 0.830009
Target:  5'- -gCCCGUggGccuCCACgaagcuguCGGCCUCGaGCg -3'
miRNA:   3'- ggGGGCGuuCu--GGUG--------GCCGGAGUaCG- -5'
28771 3' -59 NC_006146.1 + 130768 0.66 0.830009
Target:  5'- gCCCuguaCCGCAAGGacaUCGCgGGCCUCuccaaaaGCg -3'
miRNA:   3'- -GGG----GGCGUUCU---GGUGgCCGGAGua-----CG- -5'
28771 3' -59 NC_006146.1 + 36149 0.66 0.828388
Target:  5'- aUCCCacucugggacgaGCGuuGGCCugGCUGGCCUgGUGCa -3'
miRNA:   3'- -GGGGg-----------CGUu-CUGG--UGGCCGGAgUACG- -5'
28771 3' -59 NC_006146.1 + 120180 0.66 0.828388
Target:  5'- aCCCCGaCcGGGCCcucgucuaugacCCGGCCUCuaacagggaaGUGCc -3'
miRNA:   3'- gGGGGC-GuUCUGGu-----------GGCCGGAG----------UACG- -5'
28771 3' -59 NC_006146.1 + 45418 0.66 0.821838
Target:  5'- gCCagCGCGAGGCC-CCGGCCggguugaaGUGg -3'
miRNA:   3'- gGGg-GCGUUCUGGuGGCCGGag------UACg -5'
28771 3' -59 NC_006146.1 + 103002 0.66 0.821838
Target:  5'- gCUCCCaCGAGGCCcaguucguGCUGGUCUCGgccGCu -3'
miRNA:   3'- -GGGGGcGUUCUGG--------UGGCCGGAGUa--CG- -5'
28771 3' -59 NC_006146.1 + 114705 0.66 0.821838
Target:  5'- uCgUCCGCGAGACC-CgGGCCcug-GCg -3'
miRNA:   3'- -GgGGGCGUUCUGGuGgCCGGaguaCG- -5'
28771 3' -59 NC_006146.1 + 134222 0.66 0.821838
Target:  5'- cCCCCCuuAguGGACUGCaGGCC-CAUGUa -3'
miRNA:   3'- -GGGGGcgU--UCUGGUGgCCGGaGUACG- -5'
28771 3' -59 NC_006146.1 + 154234 0.66 0.821838
Target:  5'- aCgCCGCAcaccguuagccAGGCCGCUggugGGCCUCAgGUu -3'
miRNA:   3'- gGgGGCGU-----------UCUGGUGG----CCGGAGUaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.