miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28771 5' -58.8 NC_006146.1 + 150880 0.66 0.797246
Target:  5'- -uGCGGGGGACGcUGGCacaCCGGGc- -3'
miRNA:   3'- ucCGUCCCCUGUuACCGca-GGUCCuc -5'
28771 5' -58.8 NC_006146.1 + 157036 0.66 0.797246
Target:  5'- -uGCGGGGGACGcUGGCacaCCGGGc- -3'
miRNA:   3'- ucCGUCCCCUGUuACCGca-GGUCCuc -5'
28771 5' -58.8 NC_006146.1 + 75256 0.66 0.791928
Target:  5'- cGGGCGuGGGGuGCAcggggAUGGCcgaggagccgagagcGUCCGGGAc -3'
miRNA:   3'- -UCCGU-CCCC-UGU-----UACCG---------------CAGGUCCUc -5'
28771 5' -58.8 NC_006146.1 + 67133 0.66 0.791928
Target:  5'- uGGCAGaggaagaccGGGAgccgcuggccgcuccUGAgcgcGGCGUCCGGGAGg -3'
miRNA:   3'- uCCGUC---------CCCU---------------GUUa---CCGCAGGUCCUC- -5'
28771 5' -58.8 NC_006146.1 + 170416 0.67 0.779328
Target:  5'- gGGGCggAGGGGGgGGUcccgcggggcccGGCGcgugCCGGGGGa -3'
miRNA:   3'- -UCCG--UCCCCUgUUA------------CCGCa---GGUCCUC- -5'
28771 5' -58.8 NC_006146.1 + 168553 0.67 0.779328
Target:  5'- gGGGCggAGGGGGgGGUcccgcggggcccGGCGcgugCCGGGGGa -3'
miRNA:   3'- -UCCG--UCCCCUgUUA------------CCGCa---GGUCCUC- -5'
28771 5' -58.8 NC_006146.1 + 92820 0.67 0.779328
Target:  5'- uGGCaaAGGGGGCu---GCGguaCCAGGGGg -3'
miRNA:   3'- uCCG--UCCCCUGuuacCGCa--GGUCCUC- -5'
28771 5' -58.8 NC_006146.1 + 169485 0.67 0.779328
Target:  5'- gGGGCggAGGGGGgGGUcccgcggggcccGGCGcgugCCGGGGGa -3'
miRNA:   3'- -UCCG--UCCCCUgUUA------------CCGCa---GGUCCUC- -5'
28771 5' -58.8 NC_006146.1 + 161724 0.67 0.779328
Target:  5'- aAGGCuuGGGGGugGGUGGCacgguGGGAGc -3'
miRNA:   3'- -UCCG--UCCCCugUUACCGcagg-UCCUC- -5'
28771 5' -58.8 NC_006146.1 + 57331 0.67 0.770174
Target:  5'- uGGCucucuGGGGGCGGggccccgGGUGUCggugaGGGAGg -3'
miRNA:   3'- uCCGu----CCCCUGUUa------CCGCAGg----UCCUC- -5'
28771 5' -58.8 NC_006146.1 + 65200 0.67 0.770174
Target:  5'- uAGGCGcucuGGGGGCccuggGAgcccgGGCGUCCAG-AGg -3'
miRNA:   3'- -UCCGU----CCCCUG-----UUa----CCGCAGGUCcUC- -5'
28771 5' -58.8 NC_006146.1 + 136735 0.67 0.767405
Target:  5'- cGGCuGGGGGCGcaccccccacccucGccggGGC-UCCGGGAGg -3'
miRNA:   3'- uCCGuCCCCUGU--------------Ua---CCGcAGGUCCUC- -5'
28771 5' -58.8 NC_006146.1 + 104274 0.67 0.760902
Target:  5'- gAGGCAGaGGGACuuguaGGUGUCCuuGGc- -3'
miRNA:   3'- -UCCGUC-CCCUGuua--CCGCAGGu-CCuc -5'
28771 5' -58.8 NC_006146.1 + 83670 0.67 0.760902
Target:  5'- uAGGaucuuGGGGAUGAUGGCGucuUCCAGcAGu -3'
miRNA:   3'- -UCCgu---CCCCUGUUACCGC---AGGUCcUC- -5'
28771 5' -58.8 NC_006146.1 + 165227 0.67 0.760902
Target:  5'- cGuGUAGGGGGCAAaGGCGga-GGGAa -3'
miRNA:   3'- uC-CGUCCCCUGUUaCCGCaggUCCUc -5'
28771 5' -58.8 NC_006146.1 + 15501 0.67 0.760902
Target:  5'- ---gGGGGGAC-GUGGUGUaCUGGGAGa -3'
miRNA:   3'- uccgUCCCCUGuUACCGCA-GGUCCUC- -5'
28771 5' -58.8 NC_006146.1 + 49266 0.67 0.751521
Target:  5'- gAGGCggagaAGGGGGCGAUcugGUCCAGGcAGg -3'
miRNA:   3'- -UCCG-----UCCCCUGUUAccgCAGGUCC-UC- -5'
28771 5' -58.8 NC_006146.1 + 53430 0.67 0.751521
Target:  5'- cGGCcgagAGGauccgaaaGGGCGGUGGUGUcugcCCGGGAGg -3'
miRNA:   3'- uCCG----UCC--------CCUGUUACCGCA----GGUCCUC- -5'
28771 5' -58.8 NC_006146.1 + 61511 0.67 0.751521
Target:  5'- cGGCcguccgaucAGGGaGGCcuccGGUGUCCGGGGGa -3'
miRNA:   3'- uCCG---------UCCC-CUGuua-CCGCAGGUCCUC- -5'
28771 5' -58.8 NC_006146.1 + 34074 0.67 0.751521
Target:  5'- uGGCAcGGGGCcg-GGgGUCcCGGGGGg -3'
miRNA:   3'- uCCGUcCCCUGuuaCCgCAG-GUCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.