miRNA display CGI


Results 21 - 40 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28772 5' -63.8 NC_006146.1 + 154249 0.66 0.60949
Target:  5'- aGCCAGGCCgCUGGuGGGCCUCagGuuGAc -3'
miRNA:   3'- -CGGUCUGG-GGCC-CUCGGGGagCucCU- -5'
28772 5' -63.8 NC_006146.1 + 41517 0.66 0.618108
Target:  5'- cGCCcggcuGACgCCCGGGAuccgcggGCUCCUCcuGAGGc -3'
miRNA:   3'- -CGGu----CUG-GGGCCCU-------CGGGGAG--CUCCu -5'
28772 5' -63.8 NC_006146.1 + 61853 0.66 0.62865
Target:  5'- uGCCgGGACuCCCGGGgcagaGGUUCCaCGGGGGc -3'
miRNA:   3'- -CGG-UCUG-GGGCCC-----UCGGGGaGCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 135422 0.67 0.524654
Target:  5'- gGCCGGGCCgcugCCGGGuccgcuGCCCgguccuggagCUCGGGGc -3'
miRNA:   3'- -CGGUCUGG----GGCCCu-----CGGG----------GAGCUCCu -5'
28772 5' -63.8 NC_006146.1 + 135236 0.67 0.524654
Target:  5'- gGCCGGGCCgcugCCGGGuccgcuGCCCgguccuggagCUCGGGGc -3'
miRNA:   3'- -CGGUCUGG----GGCCCu-----CGGG----------GAGCUCCu -5'
28772 5' -63.8 NC_006146.1 + 135515 0.67 0.524654
Target:  5'- gGCCGGGCCgcugCCGGGuccgcuGCCCgguccuggagCUCGGGGc -3'
miRNA:   3'- -CGGUCUGG----GGCCCu-----CGGG----------GAGCUCCu -5'
28772 5' -63.8 NC_006146.1 + 135608 0.67 0.524654
Target:  5'- gGCCGGGCCgcugCCGGGuccgcuGCCCgguccuggagCUCGGGGc -3'
miRNA:   3'- -CGGUCUGG----GGCCCu-----CGGG----------GAGCUCCu -5'
28772 5' -63.8 NC_006146.1 + 136537 0.67 0.524654
Target:  5'- gGCCGGGCCgcugCCGGGuccgcuGCCCgguccuggagCUCGGGGc -3'
miRNA:   3'- -CGGUCUGG----GGCCCu-----CGGG----------GAGCUCCu -5'
28772 5' -63.8 NC_006146.1 + 136444 0.67 0.524654
Target:  5'- gGCCGGGCCgcugCCGGGuccgcuGCCCgguccuggagCUCGGGGc -3'
miRNA:   3'- -CGGUCUGG----GGCCCu-----CGGG----------GAGCUCCu -5'
28772 5' -63.8 NC_006146.1 + 136351 0.67 0.524654
Target:  5'- gGCCGGGCCgcugCCGGGuccgcuGCCCgguccuggagCUCGGGGc -3'
miRNA:   3'- -CGGUCUGG----GGCCCu-----CGGG----------GAGCUCCu -5'
28772 5' -63.8 NC_006146.1 + 20939 0.67 0.542265
Target:  5'- gGCCcuGGCCCCcacucccacgccuGGGcGCCCCUcaacccCGAGGGc -3'
miRNA:   3'- -CGGu-CUGGGG-------------CCCuCGGGGA------GCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 116974 0.67 0.55255
Target:  5'- uCCGGACCUCGaGGAGCUCaacgagcgCGuGGAg -3'
miRNA:   3'- cGGUCUGGGGC-CCUCGGGga------GCuCCU- -5'
28772 5' -63.8 NC_006146.1 + 57228 0.67 0.55255
Target:  5'- gGCCGGGCCCgGGcccGAGCCaccuCUCGucGAc -3'
miRNA:   3'- -CGGUCUGGGgCC---CUCGGg---GAGCucCU- -5'
28772 5' -63.8 NC_006146.1 + 24883 0.67 0.571394
Target:  5'- uGCCAGgagcuGCCCCccu-GCCCCUCGGuGGGc -3'
miRNA:   3'- -CGGUC-----UGGGGcccuCGGGGAGCU-CCU- -5'
28772 5' -63.8 NC_006146.1 + 135329 0.67 0.524654
Target:  5'- gGCCGGGCCgcugCCGGGuccgcuGCCCgguccuggagCUCGGGGc -3'
miRNA:   3'- -CGGUCUGG----GGCCCu-----CGGG----------GAGCUCCu -5'
28772 5' -63.8 NC_006146.1 + 135886 0.67 0.524654
Target:  5'- gGCCGGGCCgcugCCGGGuccgcuGCCCgguccuggagCUCGGGGc -3'
miRNA:   3'- -CGGUCUGG----GGCCCu-----CGGG----------GAGCUCCu -5'
28772 5' -63.8 NC_006146.1 + 135979 0.67 0.524654
Target:  5'- gGCCGGGCCgcugCCGGGuccgcuGCCCgguccuggagCUCGGGGc -3'
miRNA:   3'- -CGGUCUGG----GGCCCu-----CGGG----------GAGCUCCu -5'
28772 5' -63.8 NC_006146.1 + 136072 0.67 0.524654
Target:  5'- gGCCGGGCCgcugCCGGGuccgcuGCCCgguccuggagCUCGGGGc -3'
miRNA:   3'- -CGGUCUGG----GGCCCu-----CGGG----------GAGCUCCu -5'
28772 5' -63.8 NC_006146.1 + 136165 0.67 0.524654
Target:  5'- gGCCGGGCCgcugCCGGGuccgcuGCCCgguccuggagCUCGGGGc -3'
miRNA:   3'- -CGGUCUGG----GGCCCu-----CGGG----------GAGCUCCu -5'
28772 5' -63.8 NC_006146.1 + 136258 0.67 0.524654
Target:  5'- gGCCGGGCCgcugCCGGGuccgcuGCCCgguccuggagCUCGGGGc -3'
miRNA:   3'- -CGGUCUGG----GGCCCu-----CGGG----------GAGCUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.