miRNA display CGI


Results 21 - 40 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28772 5' -63.8 NC_006146.1 + 127630 0.66 0.580876
Target:  5'- uGCCGGACCuCCaGGccgcccuguGCCUCUCGGuGGGc -3'
miRNA:   3'- -CGGUCUGG-GGcCCu--------CGGGGAGCU-CCU- -5'
28772 5' -63.8 NC_006146.1 + 62996 0.66 0.580876
Target:  5'- gGCCcuGGGCUCCGGGAGUCUggCGGGu- -3'
miRNA:   3'- -CGG--UCUGGGGCCCUCGGGgaGCUCcu -5'
28772 5' -63.8 NC_006146.1 + 4917 0.66 0.579926
Target:  5'- aGCCGGACCCucgcuguCGGGuGGCCgugcucugugCCcCGGGGAc -3'
miRNA:   3'- -CGGUCUGGG-------GCCC-UCGG----------GGaGCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 83825 0.67 0.575182
Target:  5'- cGCC-GACCCUGGauagugcuucagguaGAGCUCgUgGAGGAa -3'
miRNA:   3'- -CGGuCUGGGGCC---------------CUCGGGgAgCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 13104 0.67 0.575182
Target:  5'- cUCGGACCUggcccuguuuguggaCGGGGGCuCCCgggcccaCGAGGAg -3'
miRNA:   3'- cGGUCUGGG---------------GCCCUCG-GGGa------GCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 168118 0.67 0.571394
Target:  5'- gGCCGGcgcGCgCCCGGG-GUCCCg-GGGGGc -3'
miRNA:   3'- -CGGUC---UG-GGGCCCuCGGGGagCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 68199 0.67 0.571394
Target:  5'- gGCgCAGcgGCUCCGGGAggucagacGCUUCUUGGGGAg -3'
miRNA:   3'- -CG-GUC--UGGGGCCCU--------CGGGGAGCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 167186 0.67 0.571394
Target:  5'- gGCCGGcgcGCgCCCGGG-GUCCCg-GGGGGc -3'
miRNA:   3'- -CGGUC---UG-GGGCCCuCGGGGagCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 169050 0.67 0.571394
Target:  5'- gGCCGGcgcGCgCCCGGG-GUCCCg-GGGGGc -3'
miRNA:   3'- -CGGUC---UG-GGGCCCuCGGGGagCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 155562 0.67 0.571394
Target:  5'- aGCCGGGCUCgCGcGGGGCgCCCgccaGGGGc -3'
miRNA:   3'- -CGGUCUGGG-GC-CCUCG-GGGag--CUCCu -5'
28772 5' -63.8 NC_006146.1 + 24883 0.67 0.571394
Target:  5'- uGCCAGgagcuGCCCCccu-GCCCCUCGGuGGGc -3'
miRNA:   3'- -CGGUC-----UGGGGcccuCGGGGAGCU-CCU- -5'
28772 5' -63.8 NC_006146.1 + 169982 0.67 0.571394
Target:  5'- gGCCGGcgcGCgCCCGGG-GUCCCg-GGGGGc -3'
miRNA:   3'- -CGGUC---UG-GGGCCCuCGGGGagCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 170201 0.67 0.568557
Target:  5'- gGCCGGGgCCUGgcgggggccagcgcGGGGUCCCggggCGGGGGg -3'
miRNA:   3'- -CGGUCUgGGGC--------------CCUCGGGGa---GCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 168338 0.67 0.568557
Target:  5'- gGCCGGGgCCUGgcgggggccagcgcGGGGUCCCggggCGGGGGg -3'
miRNA:   3'- -CGGUCUgGGGC--------------CCUCGGGGa---GCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 167406 0.67 0.568557
Target:  5'- gGCCGGGgCCUGgcgggggccagcgcGGGGUCCCggggCGGGGGg -3'
miRNA:   3'- -CGGUCUgGGGC--------------CCUCGGGGa---GCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 169270 0.67 0.568557
Target:  5'- gGCCGGGgCCUGgcgggggccagcgcGGGGUCCCggggCGGGGGg -3'
miRNA:   3'- -CGGUCUgGGGC--------------CCUCGGGGa---GCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 170320 0.67 0.561951
Target:  5'- cGCCGGGCCgCGcccccGGCCCCUCuccuGGGAg -3'
miRNA:   3'- -CGGUCUGGgGCcc---UCGGGGAGc---UCCU- -5'
28772 5' -63.8 NC_006146.1 + 169389 0.67 0.561951
Target:  5'- cGCCGGGCCgCGcccccGGCCCCUCuccuGGGAg -3'
miRNA:   3'- -CGGUCUGGgGCcc---UCGGGGAGc---UCCU- -5'
28772 5' -63.8 NC_006146.1 + 168457 0.67 0.561951
Target:  5'- cGCCGGGCCgCGcccccGGCCCCUCuccuGGGAg -3'
miRNA:   3'- -CGGUCUGGgGCcc---UCGGGGAGc---UCCU- -5'
28772 5' -63.8 NC_006146.1 + 130486 0.67 0.561951
Target:  5'- uGCC--GCCCCGGGuggcuacuuuGCCCC-CGcGGGAg -3'
miRNA:   3'- -CGGucUGGGGCCCu---------CGGGGaGC-UCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.