Results 21 - 40 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28774 | 3' | -65 | NC_006146.1 | + | 150899 | 0.66 | 0.542994 |
Target: 5'- -cCGGGCCGC-Cgg-GGUCCC-UCCGg -3' miRNA: 3'- gaGCCCGGCGaGagaCCGGGGuGGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 147821 | 0.66 | 0.542994 |
Target: 5'- -cCGGGCCGC-Cgg-GGUCCC-UCCGg -3' miRNA: 3'- gaGCCCGGCGaGagaCCGGGGuGGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 144743 | 0.66 | 0.542994 |
Target: 5'- -cCGGGCCGC-Cgg-GGUCCC-UCCGg -3' miRNA: 3'- gaGCCCGGCGaGagaCCGGGGuGGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 151220 | 0.66 | 0.561682 |
Target: 5'- --gGGGCUGCUCg--GGUCCCuuCUCGg -3' miRNA: 3'- gagCCCGGCGAGagaCCGGGGu-GGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 135331 | 0.67 | 0.497264 |
Target: 5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3' miRNA: 3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 135517 | 0.67 | 0.497264 |
Target: 5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3' miRNA: 3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 136260 | 0.67 | 0.497264 |
Target: 5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3' miRNA: 3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 126958 | 0.67 | 0.470668 |
Target: 5'- -cCGGG-CGCg-UCUGGauagaCCCCGCCCGa -3' miRNA: 3'- gaGCCCgGCGagAGACC-----GGGGUGGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 135888 | 0.67 | 0.497264 |
Target: 5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3' miRNA: 3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 135795 | 0.67 | 0.497264 |
Target: 5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3' miRNA: 3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 135610 | 0.67 | 0.497264 |
Target: 5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3' miRNA: 3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 92279 | 0.67 | 0.461964 |
Target: 5'- cCUgGGGCUGCUgCUggggggcgGGCCCgGCCUGg -3' miRNA: 3'- -GAgCCCGGCGA-GAga------CCGGGgUGGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 92159 | 0.67 | 0.461964 |
Target: 5'- cCUgGGGCUGCUgCUggggggcgGGCCCgGCCUGg -3' miRNA: 3'- -GAgCCCGGCGA-GAga------CCGGGgUGGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 92099 | 0.67 | 0.461964 |
Target: 5'- cCUgGGGCUGCUgCUggggggcgGGCCCgGCCUGg -3' miRNA: 3'- -GAgCCCGGCGA-GAga------CCGGGgUGGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 92010 | 0.67 | 0.461964 |
Target: 5'- cCUgGGGCUGCUgCUggggggcgGGCCCgGCCUGg -3' miRNA: 3'- -GAgCCCGGCGA-GAga------CCGGGgUGGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 136539 | 0.67 | 0.497264 |
Target: 5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3' miRNA: 3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 41874 | 0.67 | 0.497264 |
Target: 5'- gCUCGGGCUGCg--CcGuGCCCCggACCUGa -3' miRNA: 3'- -GAGCCCGGCGagaGaC-CGGGG--UGGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 136353 | 0.67 | 0.497264 |
Target: 5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3' miRNA: 3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 136446 | 0.67 | 0.497264 |
Target: 5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3' miRNA: 3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 136074 | 0.67 | 0.497264 |
Target: 5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3' miRNA: 3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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