miRNA display CGI


Results 61 - 80 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28774 3' -65 NC_006146.1 + 137561 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 33379 0.68 0.411621
Target:  5'- -cCGGGCCGCU-----GCCCCGCuCCGg -3'
miRNA:   3'- gaGCCCGGCGAgagacCGGGGUG-GGC- -5'
28774 3' -65 NC_006146.1 + 33257 0.68 0.411621
Target:  5'- -cCGGGCCGCU-----GCCCCGCuCCGg -3'
miRNA:   3'- gaGCCCGGCGAgagacCGGGGUG-GGC- -5'
28774 3' -65 NC_006146.1 + 52640 0.68 0.452488
Target:  5'- -cCGGGCCGagaacaugggCUCUGGCCCCcaguacgugcgcaGCCg- -3'
miRNA:   3'- gaGCCCGGCga--------GAGACCGGGG-------------UGGgc -5'
28774 3' -65 NC_006146.1 + 117258 0.68 0.444814
Target:  5'- gUCGGG-CGCUgaCUGaGCCCCgcgauccugccgACCCGg -3'
miRNA:   3'- gAGCCCgGCGAgaGAC-CGGGG------------UGGGC- -5'
28774 3' -65 NC_006146.1 + 66755 0.68 0.43386
Target:  5'- gCUCGGcuacucGCUGCUCUacggcgucaugaagCUGGCCgacaCCACCCa -3'
miRNA:   3'- -GAGCC------CGGCGAGA--------------GACCGG----GGUGGGc -5'
28774 3' -65 NC_006146.1 + 102783 0.68 0.411621
Target:  5'- -gUGGcGCCGCUCccgcggaccggCUGGCcgCCCACCUGg -3'
miRNA:   3'- gaGCC-CGGCGAGa----------GACCG--GGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 33133 0.68 0.411621
Target:  5'- -cCGGGCCGCU-----GCCCCGCuCCGg -3'
miRNA:   3'- gaGCCCGGCGAgagacCGGGGUG-GGC- -5'
28774 3' -65 NC_006146.1 + 158265 0.68 0.403565
Target:  5'- aCUCGGGg-GgaCUCUGGCCCagcCCCGg -3'
miRNA:   3'- -GAGCCCggCgaGAGACCGGGgu-GGGC- -5'
28774 3' -65 NC_006146.1 + 55220 0.68 0.436374
Target:  5'- gUC-GGCCGC-CUCUGcCUCCGCCCu -3'
miRNA:   3'- gAGcCCGGCGaGAGACcGGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 94149 0.69 0.357386
Target:  5'- aCUCGGGCUGCUCgugCccgugGGCCuCCACg-- -3'
miRNA:   3'- -GAGCCCGGCGAGa--Ga----CCGG-GGUGggc -5'
28774 3' -65 NC_006146.1 + 2093 0.69 0.380006
Target:  5'- -cCGGGCCGCcccggggcUCccccgcgccgaUCUGaGCgCCCACCCGu -3'
miRNA:   3'- gaGCCCGGCG--------AG-----------AGAC-CG-GGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 169391 0.69 0.387757
Target:  5'- -cCGGGCCGCgcccCcGGCCCCucuCCUGg -3'
miRNA:   3'- gaGCCCGGCGaga-GaCCGGGGu--GGGC- -5'
28774 3' -65 NC_006146.1 + 170322 0.69 0.387757
Target:  5'- -cCGGGCCGCgcccCcGGCCCCucuCCUGg -3'
miRNA:   3'- gaGCCCGGCGaga-GaCCGGGGu--GGGC- -5'
28774 3' -65 NC_006146.1 + 167527 0.69 0.387757
Target:  5'- -cCGGGCCGCgcccCcGGCCCCucuCCUGg -3'
miRNA:   3'- gaGCCCGGCGaga-GaCCGGGGu--GGGC- -5'
28774 3' -65 NC_006146.1 + 168459 0.69 0.387757
Target:  5'- -cCGGGCCGCgcccCcGGCCCCucuCCUGg -3'
miRNA:   3'- gaGCCCGGCGaga-GaCCGGGGu--GGGC- -5'
28774 3' -65 NC_006146.1 + 1161 0.69 0.380006
Target:  5'- -cCGGGCCGCcccggggcUCccccgcgccgaUCUGaGCgCCCACCCGu -3'
miRNA:   3'- gaGCCCGGCG--------AG-----------AGAC-CG-GGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 3025 0.69 0.380006
Target:  5'- -cCGGGCCGCcccggggcUCccccgcgccgaUCUGaGCgCCCACCCGu -3'
miRNA:   3'- gaGCCCGGCG--------AG-----------AGAC-CG-GGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 40851 0.69 0.387757
Target:  5'- --gGGGgCGCUCUUggaGGCCCgGCUCGc -3'
miRNA:   3'- gagCCCgGCGAGAGa--CCGGGgUGGGC- -5'
28774 3' -65 NC_006146.1 + 47827 0.69 0.387757
Target:  5'- gCUCGGGCUgccagagcgcgGCUCUCgaGGaCCCUcuccuccagcGCCCGg -3'
miRNA:   3'- -GAGCCCGG-----------CGAGAGa-CC-GGGG----------UGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.