miRNA display CGI


Results 81 - 100 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28774 3' -65 NC_006146.1 + 108577 0.7 0.321828
Target:  5'- gCUgGcGGCgGCgUCUCUGGCCUCGCUgGg -3'
miRNA:   3'- -GAgC-CCGgCG-AGAGACCGGGGUGGgC- -5'
28774 3' -65 NC_006146.1 + 19085 0.7 0.335726
Target:  5'- cCUCuGGagGC-C-CUGGCCCCGCCCGg -3'
miRNA:   3'- -GAGcCCggCGaGaGACCGGGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 25241 0.7 0.335726
Target:  5'- cCUCuGGagGC-C-CUGGCCCCGCCCGg -3'
miRNA:   3'- -GAGcCCggCGaGaGACCGGGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 116667 0.7 0.342838
Target:  5'- --gGGGCCGCccagaggCUCUGcucccGCCCCAUCCu -3'
miRNA:   3'- gagCCCGGCGa------GAGAC-----CGGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 123263 0.7 0.341407
Target:  5'- -cCGGGCCGCggccagagacggCUCgUGGCCCUAUCgGc -3'
miRNA:   3'- gaGCCCGGCGa-----------GAG-ACCGGGGUGGgC- -5'
28774 3' -65 NC_006146.1 + 168857 0.7 0.333614
Target:  5'- uCUCGGGCC-CUCUCUuggcgcugaGGCCuagggucaucguugCCGCCCc -3'
miRNA:   3'- -GAGCCCGGcGAGAGA---------CCGG--------------GGUGGGc -5'
28774 3' -65 NC_006146.1 + 123071 0.7 0.328723
Target:  5'- cCUCGaGaGCCGCgCUCUGGCagCCCgaGCCCa -3'
miRNA:   3'- -GAGC-C-CGGCGaGAGACCG--GGG--UGGGc -5'
28774 3' -65 NC_006146.1 + 68485 0.7 0.308364
Target:  5'- -gCGGGCUaugGCUCUUUGGCCgC-CCCa -3'
miRNA:   3'- gaGCCCGG---CGAGAGACCGGgGuGGGc -5'
28774 3' -65 NC_006146.1 + 12475 0.7 0.321828
Target:  5'- cCUCGGGCC-C-CUCUGGacuccggcuuCCCCAUCCc -3'
miRNA:   3'- -GAGCCCGGcGaGAGACC----------GGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 15554 0.7 0.321828
Target:  5'- cCUCGGGCC-C-CUCUGGacuccggcuuCCCCAUCCc -3'
miRNA:   3'- -GAGCCCGGcGaGAGACC----------GGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 22163 0.7 0.335726
Target:  5'- cCUCuGGagGC-C-CUGGCCCCGCCCGg -3'
miRNA:   3'- -GAGcCCggCGaGaGACCGGGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 54622 0.7 0.335726
Target:  5'- aUCcGGCCGcCUCUCUGGUCCgGuggcucCCCGg -3'
miRNA:   3'- gAGcCCGGC-GAGAGACCGGGgU------GGGC- -5'
28774 3' -65 NC_006146.1 + 3736 0.7 0.342838
Target:  5'- --gGGGCCGCg---UGGCCCUucaGCCCGg -3'
miRNA:   3'- gagCCCGGCGagagACCGGGG---UGGGC- -5'
28774 3' -65 NC_006146.1 + 18632 0.7 0.321828
Target:  5'- cCUCGGGCC-C-CUCUGGacuccggcuuCCCCAUCCc -3'
miRNA:   3'- -GAGCCCGGcGaGAGACC----------GGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 16007 0.7 0.335726
Target:  5'- cCUCuGGagGC-C-CUGGCCCCGCCCGg -3'
miRNA:   3'- -GAGcCCggCGaGaGACCGGGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 12930 0.7 0.335726
Target:  5'- cCUCuGGagGC-C-CUGGCCCCGCCCGg -3'
miRNA:   3'- -GAGcCCggCGaGaGACCGGGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 27866 0.7 0.321828
Target:  5'- cCUCGGGCC-C-CUCUGGacuccggcuuCCCCAUCCc -3'
miRNA:   3'- -GAGCCCGGcGaGAGACC----------GGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 24788 0.7 0.321828
Target:  5'- cCUCGGGCC-C-CUCUGGacuccggcuuCCCCAUCCc -3'
miRNA:   3'- -GAGCCCGGcGaGAGACC----------GGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 21710 0.7 0.321828
Target:  5'- cCUCGGGCC-C-CUCUGGacuccggcuuCCCCAUCCc -3'
miRNA:   3'- -GAGCCCGGcGaGAGACC----------GGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 28319 0.7 0.335726
Target:  5'- cCUCuGGagGC-C-CUGGCCCCGCCCGg -3'
miRNA:   3'- -GAGcCCggCGaGaGACCGGGGUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.