miRNA display CGI


Results 101 - 120 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28774 3' -65 NC_006146.1 + 47633 0.71 0.276599
Target:  5'- --aGGGCCacgaGCcgUCUCUGGCCgCgGCCCGg -3'
miRNA:   3'- gagCCCGG----CG--AGAGACCGG-GgUGGGC- -5'
28774 3' -65 NC_006146.1 + 52996 0.71 0.288982
Target:  5'- uCUCGaGGCCcCUCuUCUGGCCCUggGCCUc -3'
miRNA:   3'- -GAGC-CCGGcGAG-AGACCGGGG--UGGGc -5'
28774 3' -65 NC_006146.1 + 85264 0.71 0.304409
Target:  5'- -gUGGGCCaaccagccccugucuGcCUCUCUGGCCCUuugcCCCGg -3'
miRNA:   3'- gaGCCCGG---------------C-GAGAGACCGGGGu---GGGC- -5'
28774 3' -65 NC_006146.1 + 366 0.71 0.270569
Target:  5'- -gCGGcgacaaucGCCGCgccccCUCaGGCCCCGCCCGc -3'
miRNA:   3'- gaGCC--------CGGCGa----GAGaCCGGGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 100066 0.71 0.282737
Target:  5'- aCUCGGGcCCGCU---UGGCCCUugGCCCc -3'
miRNA:   3'- -GAGCCC-GGCGAgagACCGGGG--UGGGc -5'
28774 3' -65 NC_006146.1 + 13214 0.72 0.258826
Target:  5'- cCUCGGguucaGCCGCUggCUGGCUCUGCCCc -3'
miRNA:   3'- -GAGCC-----CGGCGAgaGACCGGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 16292 0.72 0.258826
Target:  5'- cCUCGGguucaGCCGCUggCUGGCUCUGCCCc -3'
miRNA:   3'- -GAGCC-----CGGCGAgaGACCGGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 19370 0.72 0.258826
Target:  5'- cCUCGGguucaGCCGCUggCUGGCUCUGCCCc -3'
miRNA:   3'- -GAGCC-----CGGCGAgaGACCGGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 22448 0.72 0.258826
Target:  5'- cCUCGGguucaGCCGCUggCUGGCUCUGCCCc -3'
miRNA:   3'- -GAGCC-----CGGCGAgaGACCGGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 25526 0.72 0.258826
Target:  5'- cCUCGGguucaGCCGCUggCUGGCUCUGCCCc -3'
miRNA:   3'- -GAGCC-----CGGCGAgaGACCGGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 28604 0.72 0.258826
Target:  5'- cCUCGGguucaGCCGCUggCUGGCUCUGCCCc -3'
miRNA:   3'- -GAGCC-----CGGCGAgaGACCGGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 48709 0.72 0.264645
Target:  5'- gCUCcGuCCGCUCUCUGGCcuCCCGCUCGc -3'
miRNA:   3'- -GAGcCcGGCGAGAGACCG--GGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 62014 0.72 0.258826
Target:  5'- aCUCGcuGGCCGCggcgCUC-GGCCUCugCCGc -3'
miRNA:   3'- -GAGC--CCGGCGa---GAGaCCGGGGugGGC- -5'
28774 3' -65 NC_006146.1 + 3161 0.73 0.211076
Target:  5'- -gCGGcgacaaucGCCGCgccccCUCaGGCCCCACCCGa -3'
miRNA:   3'- gaGCC--------CGGCGa----GAGaCCGGGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 158164 0.73 0.219475
Target:  5'- cCUCGGGCCucugggcuggucucGCUUgCUGGCCCCAauggCCGc -3'
miRNA:   3'- -GAGCCCGG--------------CGAGaGACCGGGGUg---GGC- -5'
28774 3' -65 NC_006146.1 + 142773 0.73 0.219475
Target:  5'- cCUCGGGCCucugggcuggucucGCUUgCUGGCCCCAauggCCGc -3'
miRNA:   3'- -GAGCCCGG--------------CGAGaGACCGGGGUg---GGC- -5'
28774 3' -65 NC_006146.1 + 152007 0.73 0.219475
Target:  5'- cCUCGGGCCucugggcuggucucGCUUgCUGGCCCCAauggCCGc -3'
miRNA:   3'- -GAGCCCGG--------------CGAGaGACCGGGGUg---GGC- -5'
28774 3' -65 NC_006146.1 + 145851 0.73 0.219475
Target:  5'- cCUCGGGCCucugggcuggucucGCUUgCUGGCCCCAauggCCGc -3'
miRNA:   3'- -GAGCCCGG--------------CGAGaGACCGGGGUg---GGC- -5'
28774 3' -65 NC_006146.1 + 1297 0.73 0.211076
Target:  5'- -gCGGcgacaaucGCCGCgccccCUCaGGCCCCACCCGa -3'
miRNA:   3'- gaGCC--------CGGCGa----GAGaCCGGGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 2229 0.73 0.211076
Target:  5'- -gCGGcgacaaucGCCGCgccccCUCaGGCCCCACCCGa -3'
miRNA:   3'- gaGCC--------CGGCGa----GAGaCCGGGGUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.