miRNA display CGI


Results 61 - 80 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28774 3' -65 NC_006146.1 + 102783 0.68 0.411621
Target:  5'- -gUGGcGCCGCUCccgcggaccggCUGGCcgCCCACCUGg -3'
miRNA:   3'- gaGCC-CGGCGAGa----------GACCG--GGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 33133 0.68 0.411621
Target:  5'- -cCGGGCCGCU-----GCCCCGCuCCGg -3'
miRNA:   3'- gaGCCCGGCGAgagacCGGGGUG-GGC- -5'
28774 3' -65 NC_006146.1 + 66755 0.68 0.43386
Target:  5'- gCUCGGcuacucGCUGCUCUacggcgucaugaagCUGGCCgacaCCACCCa -3'
miRNA:   3'- -GAGCC------CGGCGAGA--------------GACCGG----GGUGGGc -5'
28774 3' -65 NC_006146.1 + 55220 0.68 0.436374
Target:  5'- gUC-GGCCGC-CUCUGcCUCCGCCCu -3'
miRNA:   3'- gAGcCCGGCGaGAGACcGGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 117258 0.68 0.444814
Target:  5'- gUCGGG-CGCUgaCUGaGCCCCgcgauccugccgACCCGg -3'
miRNA:   3'- gAGCCCgGCGAgaGAC-CGGGG------------UGGGC- -5'
28774 3' -65 NC_006146.1 + 52640 0.68 0.452488
Target:  5'- -cCGGGCCGagaacaugggCUCUGGCCCCcaguacgugcgcaGCCg- -3'
miRNA:   3'- gaGCCCGGCga--------GAGACCGGGG-------------UGGgc -5'
28774 3' -65 NC_006146.1 + 92099 0.67 0.461964
Target:  5'- cCUgGGGCUGCUgCUggggggcgGGCCCgGCCUGg -3'
miRNA:   3'- -GAgCCCGGCGA-GAga------CCGGGgUGGGC- -5'
28774 3' -65 NC_006146.1 + 92010 0.67 0.461964
Target:  5'- cCUgGGGCUGCUgCUggggggcgGGCCCgGCCUGg -3'
miRNA:   3'- -GAgCCCGGCGA-GAga------CCGGGgUGGGC- -5'
28774 3' -65 NC_006146.1 + 92279 0.67 0.461964
Target:  5'- cCUgGGGCUGCUgCUggggggcgGGCCCgGCCUGg -3'
miRNA:   3'- -GAgCCCGGCGA-GAga------CCGGGgUGGGC- -5'
28774 3' -65 NC_006146.1 + 92159 0.67 0.461964
Target:  5'- cCUgGGGCUGCUgCUggggggcgGGCCCgGCCUGg -3'
miRNA:   3'- -GAgCCCGGCGA-GAga------CCGGGgUGGGC- -5'
28774 3' -65 NC_006146.1 + 127561 0.67 0.470668
Target:  5'- -aCGGGCUGCgccugCUGGCCCUgggcGgCCGa -3'
miRNA:   3'- gaGCCCGGCGaga--GACCGGGG----UgGGC- -5'
28774 3' -65 NC_006146.1 + 126958 0.67 0.470668
Target:  5'- -cCGGG-CGCg-UCUGGauagaCCCCGCCCGa -3'
miRNA:   3'- gaGCCCgGCGagAGACC-----GGGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 165936 0.67 0.488321
Target:  5'- ---aGGCCGCcaggaggcUCUCgUGGCCCCuggucCCCGg -3'
miRNA:   3'- gagcCCGGCG--------AGAG-ACCGGGGu----GGGC- -5'
28774 3' -65 NC_006146.1 + 230 0.67 0.488321
Target:  5'- -cCGGGgCGCcC-CUGGCCUCcCCCGc -3'
miRNA:   3'- gaGCCCgGCGaGaGACCGGGGuGGGC- -5'
28774 3' -65 NC_006146.1 + 42025 0.67 0.496367
Target:  5'- uUCGGGcCCGC-CUCcgcccccucuucgUGGCCCUuCCUGu -3'
miRNA:   3'- gAGCCC-GGCGaGAG-------------ACCGGGGuGGGC- -5'
28774 3' -65 NC_006146.1 + 135238 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 135331 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 135145 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 41874 0.67 0.497264
Target:  5'- gCUCGGGCUGCg--CcGuGCCCCggACCUGa -3'
miRNA:   3'- -GAGCCCGGCGagaGaC-CGGGG--UGGGC- -5'
28774 3' -65 NC_006146.1 + 135424 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.