miRNA display CGI


Results 41 - 60 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28774 3' -65 NC_006146.1 + 47827 0.69 0.387757
Target:  5'- gCUCGGGCUgccagagcgcgGCUCUCgaGGaCCCUcuccuccagcGCCCGg -3'
miRNA:   3'- -GAGCCCGG-----------CGAGAGa-CC-GGGG----------UGGGC- -5'
28774 3' -65 NC_006146.1 + 48709 0.72 0.264645
Target:  5'- gCUCcGuCCGCUCUCUGGCcuCCCGCUCGc -3'
miRNA:   3'- -GAGcCcGGCGAGAGACCG--GGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 52640 0.68 0.452488
Target:  5'- -cCGGGCCGagaacaugggCUCUGGCCCCcaguacgugcgcaGCCg- -3'
miRNA:   3'- gaGCCCGGCga--------GAGACCGGGG-------------UGGgc -5'
28774 3' -65 NC_006146.1 + 52996 0.71 0.288982
Target:  5'- uCUCGaGGCCcCUCuUCUGGCCCUggGCCUc -3'
miRNA:   3'- -GAGC-CCGGcGAG-AGACCGGGG--UGGGc -5'
28774 3' -65 NC_006146.1 + 54622 0.7 0.335726
Target:  5'- aUCcGGCCGcCUCUCUGGUCCgGuggcucCCCGg -3'
miRNA:   3'- gAGcCCGGC-GAGAGACCGGGgU------GGGC- -5'
28774 3' -65 NC_006146.1 + 55220 0.68 0.436374
Target:  5'- gUC-GGCCGC-CUCUGcCUCCGCCCu -3'
miRNA:   3'- gAGcCCGGCGaGAGACcGGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 62014 0.72 0.258826
Target:  5'- aCUCGcuGGCCGCggcgCUC-GGCCUCugCCGc -3'
miRNA:   3'- -GAGC--CCGGCGa---GAGaCCGGGGugGGC- -5'
28774 3' -65 NC_006146.1 + 66755 0.68 0.43386
Target:  5'- gCUCGGcuacucGCUGCUCUacggcgucaugaagCUGGCCgacaCCACCCa -3'
miRNA:   3'- -GAGCC------CGGCGAGA--------------GACCGG----GGUGGGc -5'
28774 3' -65 NC_006146.1 + 68321 0.66 0.552314
Target:  5'- cCUCGGGCCGCgagaggauggcgUCgaggacGGCCuCCGCCg- -3'
miRNA:   3'- -GAGCCCGGCG------------AGaga---CCGG-GGUGGgc -5'
28774 3' -65 NC_006146.1 + 68485 0.7 0.308364
Target:  5'- -gCGGGCUaugGCUCUUUGGCCgC-CCCa -3'
miRNA:   3'- gaGCCCGG---CGAGAGACCGGgGuGGGc -5'
28774 3' -65 NC_006146.1 + 72573 0.66 0.542994
Target:  5'- -aCGGGCCGCgC-CcGGCCCCguGCCa- -3'
miRNA:   3'- gaGCCCGGCGaGaGaCCGGGG--UGGgc -5'
28774 3' -65 NC_006146.1 + 85264 0.71 0.304409
Target:  5'- -gUGGGCCaaccagccccugucuGcCUCUCUGGCCCUuugcCCCGg -3'
miRNA:   3'- gaGCCCGG---------------C-GAGAGACCGGGGu---GGGC- -5'
28774 3' -65 NC_006146.1 + 92010 0.67 0.461964
Target:  5'- cCUgGGGCUGCUgCUggggggcgGGCCCgGCCUGg -3'
miRNA:   3'- -GAgCCCGGCGA-GAga------CCGGGgUGGGC- -5'
28774 3' -65 NC_006146.1 + 92099 0.67 0.461964
Target:  5'- cCUgGGGCUGCUgCUggggggcgGGCCCgGCCUGg -3'
miRNA:   3'- -GAgCCCGGCGA-GAga------CCGGGgUGGGC- -5'
28774 3' -65 NC_006146.1 + 92159 0.67 0.461964
Target:  5'- cCUgGGGCUGCUgCUggggggcgGGCCCgGCCUGg -3'
miRNA:   3'- -GAgCCCGGCGA-GAga------CCGGGgUGGGC- -5'
28774 3' -65 NC_006146.1 + 92219 0.66 0.524514
Target:  5'- cCUgGGGCUGCUgCUggggggcgGGCCCgGCCUGu -3'
miRNA:   3'- -GAgCCCGGCGA-GAga------CCGGGgUGGGC- -5'
28774 3' -65 NC_006146.1 + 92279 0.67 0.461964
Target:  5'- cCUgGGGCUGCUgCUggggggcgGGCCCgGCCUGg -3'
miRNA:   3'- -GAgCCCGGCGA-GAga------CCGGGgUGGGC- -5'
28774 3' -65 NC_006146.1 + 94149 0.69 0.357386
Target:  5'- aCUCGGGCUGCUCgugCccgugGGCCuCCACg-- -3'
miRNA:   3'- -GAGCCCGGCGAGa--Ga----CCGG-GGUGggc -5'
28774 3' -65 NC_006146.1 + 100066 0.71 0.282737
Target:  5'- aCUCGGGcCCGCU---UGGCCCUugGCCCc -3'
miRNA:   3'- -GAGCCC-GGCGAgagACCGGGG--UGGGc -5'
28774 3' -65 NC_006146.1 + 102783 0.68 0.411621
Target:  5'- -gUGGcGCCGCUCccgcggaccggCUGGCcgCCCACCUGg -3'
miRNA:   3'- gaGCC-CGGCGAGa----------GACCG--GGGUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.