miRNA display CGI


Results 61 - 80 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28774 3' -65 NC_006146.1 + 108577 0.7 0.321828
Target:  5'- gCUgGcGGCgGCgUCUCUGGCCUCGCUgGg -3'
miRNA:   3'- -GAgC-CCGgCG-AGAGACCGGGGUGGgC- -5'
28774 3' -65 NC_006146.1 + 109558 0.66 0.542994
Target:  5'- -aCGGGCaCGCUggugaaggugcCUCgccGGCUaggCCACCCGg -3'
miRNA:   3'- gaGCCCG-GCGA-----------GAGa--CCGG---GGUGGGC- -5'
28774 3' -65 NC_006146.1 + 114079 0.66 0.522679
Target:  5'- --aGaGGCCGC-CUCgggggccagaaGCCCCGCCCGc -3'
miRNA:   3'- gagC-CCGGCGaGAGac---------CGGGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 116667 0.7 0.342838
Target:  5'- --gGGGCCGCccagaggCUCUGcucccGCCCCAUCCu -3'
miRNA:   3'- gagCCCGGCGa------GAGAC-----CGGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 117258 0.68 0.444814
Target:  5'- gUCGGG-CGCUgaCUGaGCCCCgcgauccugccgACCCGg -3'
miRNA:   3'- gAGCCCgGCGAgaGAC-CGGGG------------UGGGC- -5'
28774 3' -65 NC_006146.1 + 119306 0.67 0.50628
Target:  5'- -gUGGuaCGCUggcccCUCUGGCUCC-CCCGg -3'
miRNA:   3'- gaGCCcgGCGA-----GAGACCGGGGuGGGC- -5'
28774 3' -65 NC_006146.1 + 123071 0.7 0.328723
Target:  5'- cCUCGaGaGCCGCgCUCUGGCagCCCgaGCCCa -3'
miRNA:   3'- -GAGC-C-CGGCGaGAGACCG--GGG--UGGGc -5'
28774 3' -65 NC_006146.1 + 123263 0.7 0.341407
Target:  5'- -cCGGGCCGCggccagagacggCUCgUGGCCCUAUCgGc -3'
miRNA:   3'- gaGCCCGGCGa-----------GAG-ACCGGGGUGGgC- -5'
28774 3' -65 NC_006146.1 + 124724 1.08 0.000619
Target:  5'- aCUCGGGCCGCUCUCUGGCCCCACCCGa -3'
miRNA:   3'- -GAGCCCGGCGAGAGACCGGGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 126958 0.67 0.470668
Target:  5'- -cCGGG-CGCg-UCUGGauagaCCCCGCCCGa -3'
miRNA:   3'- gaGCCCgGCGagAGACC-----GGGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 127561 0.67 0.470668
Target:  5'- -aCGGGCUGCgccugCUGGCCCUgggcGgCCGa -3'
miRNA:   3'- gaGCCCGGCGaga--GACCGGGG----UgGGC- -5'
28774 3' -65 NC_006146.1 + 135145 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 135238 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 135331 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 135424 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 135517 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 135610 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 135703 0.66 0.561682
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGu -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 135795 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 135888 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.