miRNA display CGI


Results 81 - 100 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28774 3' -65 NC_006146.1 + 135981 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 136074 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 136167 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 136260 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 136353 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 136446 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 136539 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 136632 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 136817 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 136910 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 137003 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 137096 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 137189 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 137282 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 137375 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 137468 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 137561 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 137756 0.66 0.515364
Target:  5'- --gGGGuCCGCUCguccgCUGGUCCgGUCCGg -3'
miRNA:   3'- gagCCC-GGCGAGa----GACCGGGgUGGGC- -5'
28774 3' -65 NC_006146.1 + 140701 0.66 0.561682
Target:  5'- --gGGGCUGg-UUCUGGCUCCGCUCc -3'
miRNA:   3'- gagCCCGGCgaGAGACCGGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 140744 0.66 0.57015
Target:  5'- --gGGuuGCCGCUCUCggaugcgUGGCcaugCCCACCCc -3'
miRNA:   3'- gagCC--CGGCGAGAG-------ACCG----GGGUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.