miRNA display CGI


Results 61 - 80 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28774 3' -65 NC_006146.1 + 123071 0.7 0.328723
Target:  5'- cCUCGaGaGCCGCgCUCUGGCagCCCgaGCCCa -3'
miRNA:   3'- -GAGC-C-CGGCGaGAGACCG--GGG--UGGGc -5'
28774 3' -65 NC_006146.1 + 119306 0.67 0.50628
Target:  5'- -gUGGuaCGCUggcccCUCUGGCUCC-CCCGg -3'
miRNA:   3'- gaGCCcgGCGA-----GAGACCGGGGuGGGC- -5'
28774 3' -65 NC_006146.1 + 117258 0.68 0.444814
Target:  5'- gUCGGG-CGCUgaCUGaGCCCCgcgauccugccgACCCGg -3'
miRNA:   3'- gAGCCCgGCGAgaGAC-CGGGG------------UGGGC- -5'
28774 3' -65 NC_006146.1 + 116667 0.7 0.342838
Target:  5'- --gGGGCCGCccagaggCUCUGcucccGCCCCAUCCu -3'
miRNA:   3'- gagCCCGGCGa------GAGAC-----CGGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 114079 0.66 0.522679
Target:  5'- --aGaGGCCGC-CUCgggggccagaaGCCCCGCCCGc -3'
miRNA:   3'- gagC-CCGGCGaGAGac---------CGGGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 109558 0.66 0.542994
Target:  5'- -aCGGGCaCGCUggugaaggugcCUCgccGGCUaggCCACCCGg -3'
miRNA:   3'- gaGCCCG-GCGA-----------GAGa--CCGG---GGUGGGC- -5'
28774 3' -65 NC_006146.1 + 108577 0.7 0.321828
Target:  5'- gCUgGcGGCgGCgUCUCUGGCCUCGCUgGg -3'
miRNA:   3'- -GAgC-CCGgCG-AGAGACCGGGGUGGgC- -5'
28774 3' -65 NC_006146.1 + 102783 0.68 0.411621
Target:  5'- -gUGGcGCCGCUCccgcggaccggCUGGCcgCCCACCUGg -3'
miRNA:   3'- gaGCC-CGGCGAGa----------GACCG--GGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 100066 0.71 0.282737
Target:  5'- aCUCGGGcCCGCU---UGGCCCUugGCCCc -3'
miRNA:   3'- -GAGCCC-GGCGAgagACCGGGG--UGGGc -5'
28774 3' -65 NC_006146.1 + 94149 0.69 0.357386
Target:  5'- aCUCGGGCUGCUCgugCccgugGGCCuCCACg-- -3'
miRNA:   3'- -GAGCCCGGCGAGa--Ga----CCGG-GGUGggc -5'
28774 3' -65 NC_006146.1 + 92279 0.67 0.461964
Target:  5'- cCUgGGGCUGCUgCUggggggcgGGCCCgGCCUGg -3'
miRNA:   3'- -GAgCCCGGCGA-GAga------CCGGGgUGGGC- -5'
28774 3' -65 NC_006146.1 + 92219 0.66 0.524514
Target:  5'- cCUgGGGCUGCUgCUggggggcgGGCCCgGCCUGu -3'
miRNA:   3'- -GAgCCCGGCGA-GAga------CCGGGgUGGGC- -5'
28774 3' -65 NC_006146.1 + 92159 0.67 0.461964
Target:  5'- cCUgGGGCUGCUgCUggggggcgGGCCCgGCCUGg -3'
miRNA:   3'- -GAgCCCGGCGA-GAga------CCGGGgUGGGC- -5'
28774 3' -65 NC_006146.1 + 92099 0.67 0.461964
Target:  5'- cCUgGGGCUGCUgCUggggggcgGGCCCgGCCUGg -3'
miRNA:   3'- -GAgCCCGGCGA-GAga------CCGGGgUGGGC- -5'
28774 3' -65 NC_006146.1 + 92010 0.67 0.461964
Target:  5'- cCUgGGGCUGCUgCUggggggcgGGCCCgGCCUGg -3'
miRNA:   3'- -GAgCCCGGCGA-GAga------CCGGGgUGGGC- -5'
28774 3' -65 NC_006146.1 + 85264 0.71 0.304409
Target:  5'- -gUGGGCCaaccagccccugucuGcCUCUCUGGCCCUuugcCCCGg -3'
miRNA:   3'- gaGCCCGG---------------C-GAGAGACCGGGGu---GGGC- -5'
28774 3' -65 NC_006146.1 + 72573 0.66 0.542994
Target:  5'- -aCGGGCCGCgC-CcGGCCCCguGCCa- -3'
miRNA:   3'- gaGCCCGGCGaGaGaCCGGGG--UGGgc -5'
28774 3' -65 NC_006146.1 + 68485 0.7 0.308364
Target:  5'- -gCGGGCUaugGCUCUUUGGCCgC-CCCa -3'
miRNA:   3'- gaGCCCGG---CGAGAGACCGGgGuGGGc -5'
28774 3' -65 NC_006146.1 + 68321 0.66 0.552314
Target:  5'- cCUCGGGCCGCgagaggauggcgUCgaggacGGCCuCCGCCg- -3'
miRNA:   3'- -GAGCCCGGCG------------AGaga---CCGG-GGUGGgc -5'
28774 3' -65 NC_006146.1 + 66755 0.68 0.43386
Target:  5'- gCUCGGcuacucGCUGCUCUacggcgucaugaagCUGGCCgacaCCACCCa -3'
miRNA:   3'- -GAGCC------CGGCGAGA--------------GACCGG----GGUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.