Results 81 - 100 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28774 | 3' | -65 | NC_006146.1 | + | 62014 | 0.72 | 0.258826 |
Target: 5'- aCUCGcuGGCCGCggcgCUC-GGCCUCugCCGc -3' miRNA: 3'- -GAGC--CCGGCGa---GAGaCCGGGGugGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 55220 | 0.68 | 0.436374 |
Target: 5'- gUC-GGCCGC-CUCUGcCUCCGCCCu -3' miRNA: 3'- gAGcCCGGCGaGAGACcGGGGUGGGc -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 54622 | 0.7 | 0.335726 |
Target: 5'- aUCcGGCCGcCUCUCUGGUCCgGuggcucCCCGg -3' miRNA: 3'- gAGcCCGGC-GAGAGACCGGGgU------GGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 52996 | 0.71 | 0.288982 |
Target: 5'- uCUCGaGGCCcCUCuUCUGGCCCUggGCCUc -3' miRNA: 3'- -GAGC-CCGGcGAG-AGACCGGGG--UGGGc -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 52640 | 0.68 | 0.452488 |
Target: 5'- -cCGGGCCGagaacaugggCUCUGGCCCCcaguacgugcgcaGCCg- -3' miRNA: 3'- gaGCCCGGCga--------GAGACCGGGG-------------UGGgc -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 48709 | 0.72 | 0.264645 |
Target: 5'- gCUCcGuCCGCUCUCUGGCcuCCCGCUCGc -3' miRNA: 3'- -GAGcCcGGCGAGAGACCG--GGGUGGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 47827 | 0.69 | 0.387757 |
Target: 5'- gCUCGGGCUgccagagcgcgGCUCUCgaGGaCCCUcuccuccagcGCCCGg -3' miRNA: 3'- -GAGCCCGG-----------CGAGAGa-CC-GGGG----------UGGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 47633 | 0.71 | 0.276599 |
Target: 5'- --aGGGCCacgaGCcgUCUCUGGCCgCgGCCCGg -3' miRNA: 3'- gagCCCGG----CG--AGAGACCGG-GgUGGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 44102 | 0.77 | 0.113678 |
Target: 5'- cCUCGGGCCGCgcgCUC-GGCgCCgaACCCGg -3' miRNA: 3'- -GAGCCCGGCGa--GAGaCCGgGG--UGGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 42025 | 0.67 | 0.496367 |
Target: 5'- uUCGGGcCCGC-CUCcgcccccucuucgUGGCCCUuCCUGu -3' miRNA: 3'- gAGCCC-GGCGaGAG-------------ACCGGGGuGGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 41874 | 0.67 | 0.497264 |
Target: 5'- gCUCGGGCUGCg--CcGuGCCCCggACCUGa -3' miRNA: 3'- -GAGCCCGGCGagaGaC-CGGGG--UGGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 41788 | 0.75 | 0.159364 |
Target: 5'- -cCGGGCgccCGCUCUCaGGCCCuCugCCGg -3' miRNA: 3'- gaGCCCG---GCGAGAGaCCGGG-GugGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 40851 | 0.69 | 0.387757 |
Target: 5'- --gGGGgCGCUCUUggaGGCCCgGCUCGc -3' miRNA: 3'- gagCCCgGCGAGAGa--CCGGGgUGGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 33379 | 0.68 | 0.411621 |
Target: 5'- -cCGGGCCGCU-----GCCCCGCuCCGg -3' miRNA: 3'- gaGCCCGGCGAgagacCGGGGUG-GGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 33257 | 0.68 | 0.411621 |
Target: 5'- -cCGGGCCGCU-----GCCCCGCuCCGg -3' miRNA: 3'- gaGCCCGGCGAgagacCGGGGUG-GGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 33133 | 0.68 | 0.411621 |
Target: 5'- -cCGGGCCGCU-----GCCCCGCuCCGg -3' miRNA: 3'- gaGCCCGGCGAgagacCGGGGUG-GGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 28604 | 0.72 | 0.258826 |
Target: 5'- cCUCGGguucaGCCGCUggCUGGCUCUGCCCc -3' miRNA: 3'- -GAGCC-----CGGCGAgaGACCGGGGUGGGc -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 28319 | 0.7 | 0.335726 |
Target: 5'- cCUCuGGagGC-C-CUGGCCCCGCCCGg -3' miRNA: 3'- -GAGcCCggCGaGaGACCGGGGUGGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 27866 | 0.7 | 0.321828 |
Target: 5'- cCUCGGGCC-C-CUCUGGacuccggcuuCCCCAUCCc -3' miRNA: 3'- -GAGCCCGGcGaGAGACC----------GGGGUGGGc -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 25526 | 0.72 | 0.258826 |
Target: 5'- cCUCGGguucaGCCGCUggCUGGCUCUGCCCc -3' miRNA: 3'- -GAGCC-----CGGCGAgaGACCGGGGUGGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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