miRNA display CGI


Results 81 - 100 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28774 3' -65 NC_006146.1 + 72573 0.66 0.542994
Target:  5'- -aCGGGCCGCgC-CcGGCCCCguGCCa- -3'
miRNA:   3'- gaGCCCGGCGaGaGaCCGGGG--UGGgc -5'
28774 3' -65 NC_006146.1 + 114079 0.66 0.522679
Target:  5'- --aGaGGCCGC-CUCgggggccagaaGCCCCGCCCGc -3'
miRNA:   3'- gagC-CCGGCGaGAGac---------CGGGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 117258 0.68 0.444814
Target:  5'- gUCGGG-CGCUgaCUGaGCCCCgcgauccugccgACCCGg -3'
miRNA:   3'- gAGCCCgGCGAgaGAC-CGGGG------------UGGGC- -5'
28774 3' -65 NC_006146.1 + 2229 0.73 0.211076
Target:  5'- -gCGGcgacaaucGCCGCgccccCUCaGGCCCCACCCGa -3'
miRNA:   3'- gaGCC--------CGGCGa----GAGaCCGGGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 124724 1.08 0.000619
Target:  5'- aCUCGGGCCGCUCUCUGGCCCCACCCGa -3'
miRNA:   3'- -GAGCCCGGCGAGAGACCGGGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 3161 0.73 0.211076
Target:  5'- -gCGGcgacaaucGCCGCgccccCUCaGGCCCCACCCGa -3'
miRNA:   3'- gaGCC--------CGGCGa----GAGaCCGGGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 142773 0.73 0.219475
Target:  5'- cCUCGGGCCucugggcuggucucGCUUgCUGGCCCCAauggCCGc -3'
miRNA:   3'- -GAGCCCGG--------------CGAGaGACCGGGGUg---GGC- -5'
28774 3' -65 NC_006146.1 + 148929 0.73 0.219475
Target:  5'- cCUCGGGCCucugggcuggucucGCUUgCUGGCCCCAauggCCGc -3'
miRNA:   3'- -GAGCCCGG--------------CGAGaGACCGGGGUg---GGC- -5'
28774 3' -65 NC_006146.1 + 1297 0.73 0.211076
Target:  5'- -gCGGcgacaaucGCCGCgccccCUCaGGCCCCACCCGa -3'
miRNA:   3'- gaGCC--------CGGCGa----GAGaCCGGGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 14562 0.75 0.155614
Target:  5'- -cUGGGCCGCUUUCggggcgUGaGCCCCAuCCCGg -3'
miRNA:   3'- gaGCCCGGCGAGAG------AC-CGGGGU-GGGC- -5'
28774 3' -65 NC_006146.1 + 2093 0.69 0.380006
Target:  5'- -cCGGGCCGCcccggggcUCccccgcgccgaUCUGaGCgCCCACCCGu -3'
miRNA:   3'- gaGCCCGGCG--------AG-----------AGAC-CG-GGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 3025 0.69 0.380006
Target:  5'- -cCGGGCCGCcccggggcUCccccgcgccgaUCUGaGCgCCCACCCGu -3'
miRNA:   3'- gaGCCCGGCG--------AG-----------AGAC-CG-GGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 40851 0.69 0.387757
Target:  5'- --gGGGgCGCUCUUggaGGCCCgGCUCGc -3'
miRNA:   3'- gagCCCgGCGAGAGa--CCGGGgUGGGC- -5'
28774 3' -65 NC_006146.1 + 102783 0.68 0.411621
Target:  5'- -gUGGcGCCGCUCccgcggaccggCUGGCcgCCCACCUGg -3'
miRNA:   3'- gaGCC-CGGCGAGa----------GACCG--GGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 66755 0.68 0.43386
Target:  5'- gCUCGGcuacucGCUGCUCUacggcgucaugaagCUGGCCgacaCCACCCa -3'
miRNA:   3'- -GAGCC------CGGCGAGA--------------GACCGG----GGUGGGc -5'
28774 3' -65 NC_006146.1 + 145851 0.73 0.219475
Target:  5'- cCUCGGGCCucugggcuggucucGCUUgCUGGCCCCAauggCCGc -3'
miRNA:   3'- -GAGCCCGG--------------CGAGaGACCGGGGUg---GGC- -5'
28774 3' -65 NC_006146.1 + 52640 0.68 0.452488
Target:  5'- -cCGGGCCGagaacaugggCUCUGGCCCCcaguacgugcgcaGCCg- -3'
miRNA:   3'- gaGCCCGGCga--------GAGACCGGGG-------------UGGgc -5'
28774 3' -65 NC_006146.1 + 92010 0.67 0.461964
Target:  5'- cCUgGGGCUGCUgCUggggggcgGGCCCgGCCUGg -3'
miRNA:   3'- -GAgCCCGGCGA-GAga------CCGGGgUGGGC- -5'
28774 3' -65 NC_006146.1 + 92099 0.67 0.461964
Target:  5'- cCUgGGGCUGCUgCUggggggcgGGCCCgGCCUGg -3'
miRNA:   3'- -GAgCCCGGCGA-GAga------CCGGGgUGGGC- -5'
28774 3' -65 NC_006146.1 + 92159 0.67 0.461964
Target:  5'- cCUgGGGCUGCUgCUggggggcgGGCCCgGCCUGg -3'
miRNA:   3'- -GAgCCCGGCGA-GAga------CCGGGgUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.