miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28774 3' -65 NC_006146.1 + 92279 0.67 0.461964
Target:  5'- cCUgGGGCUGCUgCUggggggcgGGCCCgGCCUGg -3'
miRNA:   3'- -GAgCCCGGCGA-GAga------CCGGGgUGGGC- -5'
28774 3' -65 NC_006146.1 + 127561 0.67 0.470668
Target:  5'- -aCGGGCUGCgccugCUGGCCCUgggcGgCCGa -3'
miRNA:   3'- gaGCCCGGCGaga--GACCGGGG----UgGGC- -5'
28774 3' -65 NC_006146.1 + 150899 0.66 0.542994
Target:  5'- -cCGGGCCGC-Cgg-GGUCCC-UCCGg -3'
miRNA:   3'- gaGCCCGGCGaGagaCCGGGGuGGGC- -5'
28774 3' -65 NC_006146.1 + 153977 0.66 0.542994
Target:  5'- -cCGGGCCGC-Cgg-GGUCCC-UCCGg -3'
miRNA:   3'- gaGCCCGGCGaGagaCCGGGGuGGGC- -5'
28774 3' -65 NC_006146.1 + 157055 0.66 0.542994
Target:  5'- -cCGGGCCGC-Cgg-GGUCCC-UCCGg -3'
miRNA:   3'- gaGCCCGGCGaGagaCCGGGGuGGGC- -5'
28774 3' -65 NC_006146.1 + 141986 0.66 0.561682
Target:  5'- --gGGGCUGCUCg--GGUCCCuuCUCGg -3'
miRNA:   3'- gagCCCGGCGAGagaCCGGGGu-GGGC- -5'
28774 3' -65 NC_006146.1 + 145064 0.66 0.561682
Target:  5'- --gGGGCUGCUCg--GGUCCCuuCUCGg -3'
miRNA:   3'- gagCCCGGCGAGagaCCGGGGu-GGGC- -5'
28774 3' -65 NC_006146.1 + 148142 0.66 0.561682
Target:  5'- --gGGGCUGCUCg--GGUCCCuuCUCGg -3'
miRNA:   3'- gagCCCGGCGAGagaCCGGGGu-GGGC- -5'
28774 3' -65 NC_006146.1 + 151220 0.66 0.561682
Target:  5'- --gGGGCUGCUCg--GGUCCCuuCUCGg -3'
miRNA:   3'- gagCCCGGCGAGagaCCGGGGu-GGGC- -5'
28774 3' -65 NC_006146.1 + 154298 0.66 0.561682
Target:  5'- --gGGGCUGCUCg--GGUCCCuuCUCGg -3'
miRNA:   3'- gagCCCGGCGAGagaCCGGGGu-GGGC- -5'
28774 3' -65 NC_006146.1 + 147821 0.66 0.542994
Target:  5'- -cCGGGCCGC-Cgg-GGUCCC-UCCGg -3'
miRNA:   3'- gaGCCCGGCGaGagaCCGGGGuGGGC- -5'
28774 3' -65 NC_006146.1 + 144743 0.66 0.542994
Target:  5'- -cCGGGCCGC-Cgg-GGUCCC-UCCGg -3'
miRNA:   3'- gaGCCCGGCGaGagaCCGGGGuGGGC- -5'
28774 3' -65 NC_006146.1 + 165936 0.67 0.488321
Target:  5'- ---aGGCCGCcaggaggcUCUCgUGGCCCCuggucCCCGg -3'
miRNA:   3'- gagcCCGGCG--------AGAG-ACCGGGGu----GGGC- -5'
28774 3' -65 NC_006146.1 + 230 0.67 0.488321
Target:  5'- -cCGGGgCGCcC-CUGGCCUCcCCCGc -3'
miRNA:   3'- gaGCCCgGCGaGaGACCGGGGuGGGC- -5'
28774 3' -65 NC_006146.1 + 42025 0.67 0.496367
Target:  5'- uUCGGGcCCGC-CUCcgcccccucuucgUGGCCCUuCCUGu -3'
miRNA:   3'- gAGCCC-GGCGaGAG-------------ACCGGGGuGGGC- -5'
28774 3' -65 NC_006146.1 + 41874 0.67 0.497264
Target:  5'- gCUCGGGCUGCg--CcGuGCCCCggACCUGa -3'
miRNA:   3'- -GAGCCCGGCGagaGaC-CGGGG--UGGGC- -5'
28774 3' -65 NC_006146.1 + 114079 0.66 0.522679
Target:  5'- --aGaGGCCGC-CUCgggggccagaaGCCCCGCCCGc -3'
miRNA:   3'- gagC-CCGGCGaGAGac---------CGGGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 92219 0.66 0.524514
Target:  5'- cCUgGGGCUGCUgCUggggggcgGGCCCgGCCUGu -3'
miRNA:   3'- -GAgCCCGGCGA-GAga------CCGGGgUGGGC- -5'
28774 3' -65 NC_006146.1 + 72573 0.66 0.542994
Target:  5'- -aCGGGCCGCgC-CcGGCCCCguGCCa- -3'
miRNA:   3'- gaGCCCGGCGaGaGaCCGGGG--UGGgc -5'
28774 3' -65 NC_006146.1 + 141666 0.66 0.542994
Target:  5'- -cCGGGCCGC-Cgg-GGUCCC-UCCGg -3'
miRNA:   3'- gaGCCCGGCGaGagaCCGGGGuGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.