miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28774 3' -65 NC_006146.1 + 92219 0.66 0.524514
Target:  5'- cCUgGGGCUGCUgCUggggggcgGGCCCgGCCUGu -3'
miRNA:   3'- -GAgCCCGGCGA-GAga------CCGGGgUGGGC- -5'
28774 3' -65 NC_006146.1 + 114079 0.66 0.522679
Target:  5'- --aGaGGCCGC-CUCgggggccagaaGCCCCGCCCGc -3'
miRNA:   3'- gagC-CCGGCGaGAGac---------CGGGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 137756 0.66 0.515364
Target:  5'- --gGGGuCCGCUCguccgCUGGUCCgGUCCGg -3'
miRNA:   3'- gagCCC-GGCGAGa----GACCGGGgUGGGC- -5'
28774 3' -65 NC_006146.1 + 5588 0.66 0.515364
Target:  5'- uCUCGGGgcuCUGCUCaccCgacGGCCgCCACCUGg -3'
miRNA:   3'- -GAGCCC---GGCGAGa--Ga--CCGG-GGUGGGC- -5'
28774 3' -65 NC_006146.1 + 119306 0.67 0.50628
Target:  5'- -gUGGuaCGCUggcccCUCUGGCUCC-CCCGg -3'
miRNA:   3'- gaGCCcgGCGA-----GAGACCGGGGuGGGC- -5'
28774 3' -65 NC_006146.1 + 4932 0.67 0.50628
Target:  5'- gUCGGGUgGCcgugCUCUGuGCCCCGgggaCCa -3'
miRNA:   3'- gAGCCCGgCGa---GAGAC-CGGGGUg---GGc -5'
28774 3' -65 NC_006146.1 + 135331 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 135610 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 135888 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 136167 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 135424 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 137282 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 136446 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 136260 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 136539 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 136632 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 137096 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 136910 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 136817 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5'
28774 3' -65 NC_006146.1 + 137003 0.67 0.497264
Target:  5'- -cCGGGCCGCUgC-CgGGUCCgCuGCCCGg -3'
miRNA:   3'- gaGCCCGGCGA-GaGaCCGGG-G-UGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.