Results 41 - 60 of 178 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28774 | 5' | -55.1 | NC_006146.1 | + | 120548 | 0.67 | 0.916317 |
Target: 5'- cGCUGGaucUCCACGGgcuggaaaacCAGAGCcUGGUCa -3' miRNA: 3'- cCGACC---AGGUGUUa---------GUCUCGuGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 117894 | 0.67 | 0.921952 |
Target: 5'- aGGCUGGUCaucgACccccgCGGc-CACGGCCg -3' miRNA: 3'- -CCGACCAGg---UGuua--GUCucGUGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 52706 | 0.67 | 0.927349 |
Target: 5'- gGGCgGGa----GGUCAGGGgGCGGCCg -3' miRNA: 3'- -CCGaCCaggugUUAGUCUCgUGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 29100 | 0.67 | 0.904342 |
Target: 5'- cGGCcucucgGGUCCAC---CAG-GC-CGGCCg -3' miRNA: 3'- -CCGa-----CCAGGUGuuaGUCuCGuGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 48069 | 0.67 | 0.906811 |
Target: 5'- aGCgugcGGUCCACGuacucgcucacggCGGccgacAGCGCGGCCu -3' miRNA: 3'- cCGa---CCAGGUGUua-----------GUC-----UCGUGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 29000 | 0.67 | 0.904342 |
Target: 5'- uGCcgGGUCCugGAaCAGcggcgcuccuaGGCACGGaCCa -3' miRNA: 3'- cCGa-CCAGGugUUaGUC-----------UCGUGCC-GG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 24369 | 0.67 | 0.904342 |
Target: 5'- uGGCgcagGG-CCAgcucCAGGGCGCGGCg -3' miRNA: 3'- -CCGa---CCaGGUguuaGUCUCGUGCCGg -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 40538 | 0.67 | 0.916317 |
Target: 5'- aGGUUGGUCUGCAG-CAGGGUcaugaaggugguGCGGg- -3' miRNA: 3'- -CCGACCAGGUGUUaGUCUCG------------UGCCgg -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 128392 | 0.67 | 0.927349 |
Target: 5'- aGGCaGuagCCGCAGUCcaggcAGAaCACGGCCa -3' miRNA: 3'- -CCGaCca-GGUGUUAG-----UCUcGUGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 137509 | 0.67 | 0.927349 |
Target: 5'- aGGCgGG-CCACcccccacccgGAgCGGGGCAgCGGCCc -3' miRNA: 3'- -CCGaCCaGGUG----------UUaGUCUCGU-GCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 14815 | 0.67 | 0.910447 |
Target: 5'- cGGCcGGgCCGgAGg-AGGGCACGGUCu -3' miRNA: 3'- -CCGaCCaGGUgUUagUCUCGUGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 137770 | 0.67 | 0.921952 |
Target: 5'- cGCUGGUCCG--GUCcGGGUG-GGCCu -3' miRNA: 3'- cCGACCAGGUguUAGuCUCGUgCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 33168 | 0.67 | 0.904342 |
Target: 5'- cGGCUGGgcaccgCCGCGccgccgcUCGGucCugGGCCu -3' miRNA: 3'- -CCGACCa-----GGUGUu------AGUCucGugCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 16789 | 0.67 | 0.904342 |
Target: 5'- cGGCcucucgGGUCCAC---CAG-GC-CGGCCg -3' miRNA: 3'- -CCGa-----CCAGGUGuuaGUCuCGuGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 159976 | 0.67 | 0.927349 |
Target: 5'- uGGCgcgcaGGagcCCGCAGUUGGGGUcUGGCCu -3' miRNA: 3'- -CCGa----CCa--GGUGUUAGUCUCGuGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 118386 | 0.67 | 0.903093 |
Target: 5'- aGCcaaGGUCUGCAGgauaaacaugggCGGAGCAUGGCg -3' miRNA: 3'- cCGa--CCAGGUGUUa-----------GUCUCGUGCCGg -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 13711 | 0.67 | 0.904342 |
Target: 5'- cGGCcucucgGGUCCAC---CAG-GC-CGGCCg -3' miRNA: 3'- -CCGa-----CCAGGUGuuaGUCuCGuGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 19867 | 0.67 | 0.904342 |
Target: 5'- cGGCcucucgGGUCCAC---CAG-GC-CGGCCg -3' miRNA: 3'- -CCGa-----CCAGGUGuuaGUCuCGuGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 15142 | 0.67 | 0.921399 |
Target: 5'- cGGCggGGUCUACAGcuccUCGGgcgacgccguggaAGCGCugaaGGCCg -3' miRNA: 3'- -CCGa-CCAGGUGUU----AGUC-------------UCGUG----CCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 159401 | 0.67 | 0.910446 |
Target: 5'- cGCU-GUCCACGAUCAu-G-ACGGCCc -3' miRNA: 3'- cCGAcCAGGUGUUAGUcuCgUGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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