Results 81 - 100 of 178 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28774 | 5' | -55.1 | NC_006146.1 | + | 116151 | 0.68 | 0.86596 |
Target: 5'- uGGCUGGUCUcCu-UCGGcAGCGaccugagucuccccuCGGCCg -3' miRNA: 3'- -CCGACCAGGuGuuAGUC-UCGU---------------GCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 109916 | 0.68 | 0.8704 |
Target: 5'- aGGCUgaGGaCCACAuccaccgccuuAUCGGAGUA-GGCCc -3' miRNA: 3'- -CCGA--CCaGGUGU-----------UAGUCUCGUgCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 67978 | 0.68 | 0.8704 |
Target: 5'- aGGCa-GcCCACGAUCuuGGGGCGCaGCCa -3' miRNA: 3'- -CCGacCaGGUGUUAG--UCUCGUGcCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 128550 | 0.68 | 0.898004 |
Target: 5'- cGGCgcgGGagaUCCugGAgcggCAGuuCGCGGCCu -3' miRNA: 3'- -CCGa--CC---AGGugUUa---GUCucGUGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 148128 | 0.68 | 0.874765 |
Target: 5'- uGUUGGagugCCGCAugggcuucgugcugGUCAGGGCccgggucuucucuACGGCCa -3' miRNA: 3'- cCGACCa---GGUGU--------------UAGUCUCG-------------UGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 85550 | 0.68 | 0.876918 |
Target: 5'- gGGCaucUGGUCaCACGGUCGgGGGCACgugggguGGCa -3' miRNA: 3'- -CCG---ACCAG-GUGUUAGU-CUCGUG-------CCGg -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 129650 | 0.68 | 0.8704 |
Target: 5'- cGGCUccgucuggGGUCUguac-CAGAGCAgGGCCg -3' miRNA: 3'- -CCGA--------CCAGGuguuaGUCUCGUgCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 108871 | 0.69 | 0.82277 |
Target: 5'- cGGCUGGaaUGCGG-CAGAGgccgagcgcCGCGGCCa -3' miRNA: 3'- -CCGACCagGUGUUaGUCUC---------GUGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 132759 | 0.69 | 0.831181 |
Target: 5'- gGGCcGGaugCCGCGGUCcc-GCACGGUCg -3' miRNA: 3'- -CCGaCCa--GGUGUUAGucuCGUGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 116167 | 0.69 | 0.847456 |
Target: 5'- cGGCccUGGUCCGC--UCAGAGaa-GGCa -3' miRNA: 3'- -CCG--ACCAGGUGuuAGUCUCgugCCGg -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 39764 | 0.69 | 0.839412 |
Target: 5'- aGGCUGGggCUugGAgUCAGGcUugGGCCc -3' miRNA: 3'- -CCGACCa-GGugUU-AGUCUcGugCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 61276 | 0.69 | 0.836962 |
Target: 5'- gGGCUGGUCUcacgggggccugucGCGuguuugCGGcGCGCGGCg -3' miRNA: 3'- -CCGACCAGG--------------UGUua----GUCuCGUGCCGg -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 117546 | 0.69 | 0.831181 |
Target: 5'- gGGcCUGGgCCGCAuucaggcuguUCAGGGUAUgGGCCg -3' miRNA: 3'- -CC-GACCaGGUGUu---------AGUCUCGUG-CCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 2966 | 0.69 | 0.855307 |
Target: 5'- cGCUGGacaCCGCGAgguacGAGUACGGCa -3' miRNA: 3'- cCGACCa--GGUGUUagu--CUCGUGCCGg -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 154696 | 0.69 | 0.855307 |
Target: 5'- uGGgUGGUCUGCGccCAGAuGCagcccaccaggGCGGCCa -3' miRNA: 3'- -CCgACCAGGUGUuaGUCU-CG-----------UGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 40149 | 0.69 | 0.855307 |
Target: 5'- gGGCUGG-CCAUAccUGGAGUugACGGCg -3' miRNA: 3'- -CCGACCaGGUGUuaGUCUCG--UGCCGg -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 68119 | 0.69 | 0.847456 |
Target: 5'- aGCcGGUCCGCGGUgAGcGGCGCcacGCCa -3' miRNA: 3'- cCGaCCAGGUGUUAgUC-UCGUGc--CGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 14713 | 0.69 | 0.855307 |
Target: 5'- uGGC-GGUCC-CGGugaauUCGGAGC-CGGUCu -3' miRNA: 3'- -CCGaCCAGGuGUU-----AGUCUCGuGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 123431 | 0.69 | 0.847457 |
Target: 5'- cGGCgagcugaagaGGcUCCugGAgcUCgAGAGCAUGGCCc -3' miRNA: 3'- -CCGa---------CC-AGGugUU--AG-UCUCGUGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 49732 | 0.69 | 0.839412 |
Target: 5'- aGCUGGUUgAUuucucguuUCAGGggcGCGCGGCCc -3' miRNA: 3'- cCGACCAGgUGuu------AGUCU---CGUGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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