miRNA display CGI


Results 61 - 80 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28774 5' -55.1 NC_006146.1 + 135535 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 135349 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 135256 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 136742 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 136835 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 136928 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 135163 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 137486 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 137300 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 137207 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 137114 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 137021 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 108871 0.69 0.82277
Target:  5'- cGGCUGGaaUGCGG-CAGAGgccgagcgcCGCGGCCa -3'
miRNA:   3'- -CCGACCagGUGUUaGUCUC---------GUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 132759 0.69 0.831181
Target:  5'- gGGCcGGaugCCGCGGUCcc-GCACGGUCg -3'
miRNA:   3'- -CCGaCCa--GGUGUUAGucuCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 117546 0.69 0.831181
Target:  5'- gGGcCUGGgCCGCAuucaggcuguUCAGGGUAUgGGCCg -3'
miRNA:   3'- -CC-GACCaGGUGUu---------AGUCUCGUG-CCGG- -5'
28774 5' -55.1 NC_006146.1 + 47825 0.69 0.831181
Target:  5'- gGGCUcGGgCUGC---CAGAGCGCGGCUc -3'
miRNA:   3'- -CCGA-CCaGGUGuuaGUCUCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 61276 0.69 0.836962
Target:  5'- gGGCUGGUCUcacgggggccugucGCGuguuugCGGcGCGCGGCg -3'
miRNA:   3'- -CCGACCAGG--------------UGUua----GUCuCGUGCCGg -5'
28774 5' -55.1 NC_006146.1 + 49732 0.69 0.839412
Target:  5'- aGCUGGUUgAUuucucguuUCAGGggcGCGCGGCCc -3'
miRNA:   3'- cCGACCAGgUGuu------AGUCU---CGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 39764 0.69 0.839412
Target:  5'- aGGCUGGggCUugGAgUCAGGcUugGGCCc -3'
miRNA:   3'- -CCGACCa-GGugUU-AGUCUcGugCCGG- -5'
28774 5' -55.1 NC_006146.1 + 130146 0.69 0.839412
Target:  5'- gGGCaGGUCCACGuccguggcCAGccccaAGCACgGGCCc -3'
miRNA:   3'- -CCGaCCAGGUGUua------GUC-----UCGUG-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.