miRNA display CGI


Results 81 - 100 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28774 5' -55.1 NC_006146.1 + 71156 0.69 0.839412
Target:  5'- uGGCcucuuccgaugGGUCCGCGuccUCGGAGCACcGCg -3'
miRNA:   3'- -CCGa----------CCAGGUGUu--AGUCUCGUGcCGg -5'
28774 5' -55.1 NC_006146.1 + 49732 0.69 0.839412
Target:  5'- aGCUGGUUgAUuucucguuUCAGGggcGCGCGGCCc -3'
miRNA:   3'- cCGACCAGgUGuu------AGUCU---CGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 116167 0.69 0.847456
Target:  5'- cGGCccUGGUCCGC--UCAGAGaa-GGCa -3'
miRNA:   3'- -CCG--ACCAGGUGuuAGUCUCgugCCGg -5'
28774 5' -55.1 NC_006146.1 + 68119 0.69 0.847456
Target:  5'- aGCcGGUCCGCGGUgAGcGGCGCcacGCCa -3'
miRNA:   3'- cCGaCCAGGUGUUAgUC-UCGUGc--CGG- -5'
28774 5' -55.1 NC_006146.1 + 123431 0.69 0.847457
Target:  5'- cGGCgagcugaagaGGcUCCugGAgcUCgAGAGCAUGGCCc -3'
miRNA:   3'- -CCGa---------CC-AGGugUU--AG-UCUCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 14713 0.69 0.855307
Target:  5'- uGGC-GGUCC-CGGugaauUCGGAGC-CGGUCu -3'
miRNA:   3'- -CCGaCCAGGuGUU-----AGUCUCGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 2966 0.69 0.855307
Target:  5'- cGCUGGacaCCGCGAgguacGAGUACGGCa -3'
miRNA:   3'- cCGACCa--GGUGUUagu--CUCGUGCCGg -5'
28774 5' -55.1 NC_006146.1 + 45511 0.69 0.855307
Target:  5'- uGGCcaagacGG-CCACGGUgGGGGcCugGGCCu -3'
miRNA:   3'- -CCGa-----CCaGGUGUUAgUCUC-GugCCGG- -5'
28774 5' -55.1 NC_006146.1 + 154696 0.69 0.855307
Target:  5'- uGGgUGGUCUGCGccCAGAuGCagcccaccaggGCGGCCa -3'
miRNA:   3'- -CCgACCAGGUGUuaGUCU-CG-----------UGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 40149 0.69 0.855307
Target:  5'- gGGCUGG-CCAUAccUGGAGUugACGGCg -3'
miRNA:   3'- -CCGACCaGGUGUuaGUCUCG--UGCCGg -5'
28774 5' -55.1 NC_006146.1 + 57391 0.69 0.855307
Target:  5'- gGGCUGGccCCGCGA-CcGuGCcCGGCCg -3'
miRNA:   3'- -CCGACCa-GGUGUUaGuCuCGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 116151 0.68 0.86596
Target:  5'- uGGCUGGUCUcCu-UCGGcAGCGaccugagucuccccuCGGCCg -3'
miRNA:   3'- -CCGACCAGGuGuuAGUC-UCGU---------------GCCGG- -5'
28774 5' -55.1 NC_006146.1 + 124175 0.68 0.8704
Target:  5'- aGCgUGGccUCCGCccgccUCGGAGCcgccGCGGCCg -3'
miRNA:   3'- cCG-ACC--AGGUGuu---AGUCUCG----UGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 15587 0.68 0.8704
Target:  5'- aGGC-GcGUCgGCG---AGGGCGCGGCCu -3'
miRNA:   3'- -CCGaC-CAGgUGUuagUCUCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 47380 0.68 0.8704
Target:  5'- gGGCaugaGGUCCuACgGGUUGGAGCGucUGGCCg -3'
miRNA:   3'- -CCGa---CCAGG-UG-UUAGUCUCGU--GCCGG- -5'
28774 5' -55.1 NC_006146.1 + 73504 0.68 0.8704
Target:  5'- aGGCgcgGGgUCACGcgCAGGcuuacuuuuuGCAUGGCCa -3'
miRNA:   3'- -CCGa--CCaGGUGUuaGUCU----------CGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 112742 0.68 0.8704
Target:  5'- aGGCaggUGGUCgAgGcgCAGaAGC-CGGCCa -3'
miRNA:   3'- -CCG---ACCAGgUgUuaGUC-UCGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 122532 0.68 0.8704
Target:  5'- cGGgUGGUUCGCGGaacUCGaGGC-CGGCCc -3'
miRNA:   3'- -CCgACCAGGUGUU---AGUcUCGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 109916 0.68 0.8704
Target:  5'- aGGCUgaGGaCCACAuccaccgccuuAUCGGAGUA-GGCCc -3'
miRNA:   3'- -CCGA--CCaGGUGU-----------UAGUCUCGUgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 67978 0.68 0.8704
Target:  5'- aGGCa-GcCCACGAUCuuGGGGCGCaGCCa -3'
miRNA:   3'- -CCGacCaGGUGUUAG--UCUCGUGcCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.