Results 101 - 120 of 178 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28774 | 5' | -55.1 | NC_006146.1 | + | 124175 | 0.68 | 0.8704 |
Target: 5'- aGCgUGGccUCCGCccgccUCGGAGCcgccGCGGCCg -3' miRNA: 3'- cCG-ACC--AGGUGuu---AGUCUCG----UGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 148128 | 0.68 | 0.874765 |
Target: 5'- uGUUGGagugCCGCAugggcuucgugcugGUCAGGGCccgggucuucucuACGGCCa -3' miRNA: 3'- cCGACCa---GGUGU--------------UAGUCUCG-------------UGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 85550 | 0.68 | 0.876918 |
Target: 5'- gGGCaucUGGUCaCACGGUCGgGGGCACgugggguGGCa -3' miRNA: 3'- -CCG---ACCAG-GUGUUAGU-CUCGUG-------CCGg -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 135721 | 0.68 | 0.877632 |
Target: 5'- cGCUGcccGUCCugGAgcUCGGGGCcgGgGGCCg -3' miRNA: 3'- cCGAC---CAGGugUU--AGUCUCG--UgCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 127137 | 0.68 | 0.877632 |
Target: 5'- aGGCUGcUCCGCGu--GGAGCuggACGGCg -3' miRNA: 3'- -CCGACcAGGUGUuagUCUCG---UGCCGg -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 86247 | 0.68 | 0.877632 |
Target: 5'- gGGCuUGGUUgACAG-CAGgcacgugggcAGCACGGCg -3' miRNA: 3'- -CCG-ACCAGgUGUUaGUC----------UCGUGCCGg -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 170526 | 0.68 | 0.884646 |
Target: 5'- gGGCgGGgCCugAG--GGGGCGCGGCg -3' miRNA: 3'- -CCGaCCaGGugUUagUCUCGUGCCGg -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 33990 | 0.68 | 0.889424 |
Target: 5'- cGCUGGUCCggugcaccuggaagGCAggggggggGUCGGGGCagGCGGgCg -3' miRNA: 3'- cCGACCAGG--------------UGU--------UAGUCUCG--UGCCgG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 57081 | 0.68 | 0.891438 |
Target: 5'- cGGCguaGUCCACGAgCGGcGCGuccUGGCCa -3' miRNA: 3'- -CCGac-CAGGUGUUaGUCuCGU---GCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 167729 | 0.68 | 0.891438 |
Target: 5'- cGGgUGGggCCugAG--GGGGCGCGGCg -3' miRNA: 3'- -CCgACCa-GGugUUagUCUCGUGCCGg -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 169594 | 0.68 | 0.891438 |
Target: 5'- cGGgUGGggCCugAG--GGGGCGCGGCg -3' miRNA: 3'- -CCgACCa-GGugUUagUCUCGUGCCGg -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 170101 | 0.68 | 0.891438 |
Target: 5'- gGGCcGGcgCCGCAGggGGGGC-CGGCg -3' miRNA: 3'- -CCGaCCa-GGUGUUagUCUCGuGCCGg -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 128550 | 0.68 | 0.898004 |
Target: 5'- cGGCgcgGGagaUCCugGAgcggCAGuuCGCGGCCu -3' miRNA: 3'- -CCGa--CC---AGGugUUa---GUCucGUGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 122775 | 0.68 | 0.898005 |
Target: 5'- gGGCUGGccgaacUCCAagaGAagAGAcGgGCGGCCg -3' miRNA: 3'- -CCGACC------AGGUg--UUagUCU-CgUGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 118386 | 0.67 | 0.903093 |
Target: 5'- aGCcaaGGUCUGCAGgauaaacaugggCGGAGCAUGGCg -3' miRNA: 3'- cCGa--CCAGGUGUUa-----------GUCUCGUGCCGg -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 13711 | 0.67 | 0.904342 |
Target: 5'- cGGCcucucgGGUCCAC---CAG-GC-CGGCCg -3' miRNA: 3'- -CCGa-----CCAGGUGuuaGUCuCGuGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 16789 | 0.67 | 0.904342 |
Target: 5'- cGGCcucucgGGUCCAC---CAG-GC-CGGCCg -3' miRNA: 3'- -CCGa-----CCAGGUGuuaGUCuCGuGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 24369 | 0.67 | 0.904342 |
Target: 5'- uGGCgcagGG-CCAgcucCAGGGCGCGGCg -3' miRNA: 3'- -CCGa---CCaGGUguuaGUCUCGUGCCGg -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 168482 | 0.67 | 0.904342 |
Target: 5'- cGGCcucacGUCCACGGUCGGGG---GGCCg -3' miRNA: 3'- -CCGac---CAGGUGUUAGUCUCgugCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 29000 | 0.67 | 0.904342 |
Target: 5'- uGCcgGGUCCugGAaCAGcggcgcuccuaGGCACGGaCCa -3' miRNA: 3'- cCGa-CCAGGugUUaGUC-----------UCGUGCC-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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