miRNA display CGI


Results 41 - 60 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28774 5' -55.1 NC_006146.1 + 52706 0.67 0.927349
Target:  5'- gGGCgGGa----GGUCAGGGgGCGGCCg -3'
miRNA:   3'- -CCGaCCaggugUUAGUCUCgUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 137770 0.67 0.921952
Target:  5'- cGCUGGUCCG--GUCcGGGUG-GGCCu -3'
miRNA:   3'- cCGACCAGGUguUAGuCUCGUgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 160337 0.67 0.921952
Target:  5'- aGGCUGG-CCACGGUCcauGuCACGGg- -3'
miRNA:   3'- -CCGACCaGGUGUUAGucuC-GUGCCgg -5'
28774 5' -55.1 NC_006146.1 + 42725 0.67 0.921952
Target:  5'- gGGCUGGcagCCGCGGauccgggCGGuGCugccgcacaacGCGGCCu -3'
miRNA:   3'- -CCGACCa--GGUGUUa------GUCuCG-----------UGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 2606 0.67 0.921952
Target:  5'- gGGagaGGgaagcaacaCACAGUCuGGAGCACGGCUu -3'
miRNA:   3'- -CCga-CCag-------GUGUUAG-UCUCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 117894 0.67 0.921952
Target:  5'- aGGCUGGUCaucgACccccgCGGc-CACGGCCg -3'
miRNA:   3'- -CCGACCAGg---UGuua--GUCucGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 15142 0.67 0.921399
Target:  5'- cGGCggGGUCUACAGcuccUCGGgcgacgccguggaAGCGCugaaGGCCg -3'
miRNA:   3'- -CCGa-CCAGGUGUU----AGUC-------------UCGUG----CCGG- -5'
28774 5' -55.1 NC_006146.1 + 40538 0.67 0.916317
Target:  5'- aGGUUGGUCUGCAG-CAGGGUcaugaaggugguGCGGg- -3'
miRNA:   3'- -CCGACCAGGUGUUaGUCUCG------------UGCCgg -5'
28774 5' -55.1 NC_006146.1 + 120548 0.67 0.916317
Target:  5'- cGCUGGaucUCCACGGgcuggaaaacCAGAGCcUGGUCa -3'
miRNA:   3'- cCGACC---AGGUGUUa---------GUCUCGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 70547 0.67 0.916317
Target:  5'- cGGCUGGcucgUCUugAGUCuGAGaauaaGGCCc -3'
miRNA:   3'- -CCGACC----AGGugUUAGuCUCgug--CCGG- -5'
28774 5' -55.1 NC_006146.1 + 14815 0.67 0.910447
Target:  5'- cGGCcGGgCCGgAGg-AGGGCACGGUCu -3'
miRNA:   3'- -CCGaCCaGGUgUUagUCUCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 159401 0.67 0.910446
Target:  5'- cGCU-GUCCACGAUCAu-G-ACGGCCc -3'
miRNA:   3'- cCGAcCAGGUGUUAGUcuCgUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 55795 0.67 0.910446
Target:  5'- cGCUGG-CCAgCGAcUCGGGGCGguggaagaGGCCg -3'
miRNA:   3'- cCGACCaGGU-GUU-AGUCUCGUg-------CCGG- -5'
28774 5' -55.1 NC_006146.1 + 48069 0.67 0.906811
Target:  5'- aGCgugcGGUCCACGuacucgcucacggCGGccgacAGCGCGGCCu -3'
miRNA:   3'- cCGa---CCAGGUGUua-----------GUC-----UCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 24369 0.67 0.904342
Target:  5'- uGGCgcagGG-CCAgcucCAGGGCGCGGCg -3'
miRNA:   3'- -CCGa---CCaGGUguuaGUCUCGUGCCGg -5'
28774 5' -55.1 NC_006146.1 + 26022 0.67 0.904342
Target:  5'- cGGCcucucgGGUCCAC---CAG-GC-CGGCCg -3'
miRNA:   3'- -CCGa-----CCAGGUGuuaGUCuCGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 29100 0.67 0.904342
Target:  5'- cGGCcucucgGGUCCAC---CAG-GC-CGGCCg -3'
miRNA:   3'- -CCGa-----CCAGGUGuuaGUCuCGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 16789 0.67 0.904342
Target:  5'- cGGCcucucgGGUCCAC---CAG-GC-CGGCCg -3'
miRNA:   3'- -CCGa-----CCAGGUGuuaGUCuCGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 19867 0.67 0.904342
Target:  5'- cGGCcucucgGGUCCAC---CAG-GC-CGGCCg -3'
miRNA:   3'- -CCGa-----CCAGGUGuuaGUCuCGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 168482 0.67 0.904342
Target:  5'- cGGCcucacGUCCACGGUCGGGG---GGCCg -3'
miRNA:   3'- -CCGac---CAGGUGUUAGUCUCgugCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.