miRNA display CGI


Results 61 - 80 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28774 5' -55.1 NC_006146.1 + 29000 0.67 0.904342
Target:  5'- uGCcgGGUCCugGAaCAGcggcgcuccuaGGCACGGaCCa -3'
miRNA:   3'- cCGa-CCAGGugUUaGUC-----------UCGUGCC-GG- -5'
28774 5' -55.1 NC_006146.1 + 13711 0.67 0.904342
Target:  5'- cGGCcucucgGGUCCAC---CAG-GC-CGGCCg -3'
miRNA:   3'- -CCGa-----CCAGGUGuuaGUCuCGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 168482 0.67 0.904342
Target:  5'- cGGCcucacGUCCACGGUCGGGG---GGCCg -3'
miRNA:   3'- -CCGac---CAGGUGUUAGUCUCgugCCGG- -5'
28774 5' -55.1 NC_006146.1 + 118386 0.67 0.903093
Target:  5'- aGCcaaGGUCUGCAGgauaaacaugggCGGAGCAUGGCg -3'
miRNA:   3'- cCGa--CCAGGUGUUa-----------GUCUCGUGCCGg -5'
28774 5' -55.1 NC_006146.1 + 122775 0.68 0.898005
Target:  5'- gGGCUGGccgaacUCCAagaGAagAGAcGgGCGGCCg -3'
miRNA:   3'- -CCGACC------AGGUg--UUagUCU-CgUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 128550 0.68 0.898004
Target:  5'- cGGCgcgGGagaUCCugGAgcggCAGuuCGCGGCCu -3'
miRNA:   3'- -CCGa--CC---AGGugUUa---GUCucGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 170101 0.68 0.891438
Target:  5'- gGGCcGGcgCCGCAGggGGGGC-CGGCg -3'
miRNA:   3'- -CCGaCCa-GGUGUUagUCUCGuGCCGg -5'
28774 5' -55.1 NC_006146.1 + 57081 0.68 0.891438
Target:  5'- cGGCguaGUCCACGAgCGGcGCGuccUGGCCa -3'
miRNA:   3'- -CCGac-CAGGUGUUaGUCuCGU---GCCGG- -5'
28774 5' -55.1 NC_006146.1 + 169594 0.68 0.891438
Target:  5'- cGGgUGGggCCugAG--GGGGCGCGGCg -3'
miRNA:   3'- -CCgACCa-GGugUUagUCUCGUGCCGg -5'
28774 5' -55.1 NC_006146.1 + 167729 0.68 0.891438
Target:  5'- cGGgUGGggCCugAG--GGGGCGCGGCg -3'
miRNA:   3'- -CCgACCa-GGugUUagUCUCGUGCCGg -5'
28774 5' -55.1 NC_006146.1 + 33990 0.68 0.889424
Target:  5'- cGCUGGUCCggugcaccuggaagGCAggggggggGUCGGGGCagGCGGgCg -3'
miRNA:   3'- cCGACCAGG--------------UGU--------UAGUCUCG--UGCCgG- -5'
28774 5' -55.1 NC_006146.1 + 170526 0.68 0.884646
Target:  5'- gGGCgGGgCCugAG--GGGGCGCGGCg -3'
miRNA:   3'- -CCGaCCaGGugUUagUCUCGUGCCGg -5'
28774 5' -55.1 NC_006146.1 + 127137 0.68 0.877632
Target:  5'- aGGCUGcUCCGCGu--GGAGCuggACGGCg -3'
miRNA:   3'- -CCGACcAGGUGUuagUCUCG---UGCCGg -5'
28774 5' -55.1 NC_006146.1 + 86247 0.68 0.877632
Target:  5'- gGGCuUGGUUgACAG-CAGgcacgugggcAGCACGGCg -3'
miRNA:   3'- -CCG-ACCAGgUGUUaGUC----------UCGUGCCGg -5'
28774 5' -55.1 NC_006146.1 + 135721 0.68 0.877632
Target:  5'- cGCUGcccGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGAC---CAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 85550 0.68 0.876918
Target:  5'- gGGCaucUGGUCaCACGGUCGgGGGCACgugggguGGCa -3'
miRNA:   3'- -CCG---ACCAG-GUGUUAGU-CUCGUG-------CCGg -5'
28774 5' -55.1 NC_006146.1 + 148128 0.68 0.874765
Target:  5'- uGUUGGagugCCGCAugggcuucgugcugGUCAGGGCccgggucuucucuACGGCCa -3'
miRNA:   3'- cCGACCa---GGUGU--------------UAGUCUCG-------------UGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 124175 0.68 0.8704
Target:  5'- aGCgUGGccUCCGCccgccUCGGAGCcgccGCGGCCg -3'
miRNA:   3'- cCG-ACC--AGGUGuu---AGUCUCG----UGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 73504 0.68 0.8704
Target:  5'- aGGCgcgGGgUCACGcgCAGGcuuacuuuuuGCAUGGCCa -3'
miRNA:   3'- -CCGa--CCaGGUGUuaGUCU----------CGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 47380 0.68 0.8704
Target:  5'- gGGCaugaGGUCCuACgGGUUGGAGCGucUGGCCg -3'
miRNA:   3'- -CCGa---CCAGG-UG-UUAGUCUCGU--GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.