miRNA display CGI


Results 41 - 60 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28774 5' -55.1 NC_006146.1 + 49732 0.69 0.839412
Target:  5'- aGCUGGUUgAUuucucguuUCAGGggcGCGCGGCCc -3'
miRNA:   3'- cCGACCAGgUGuu------AGUCU---CGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 52706 0.67 0.927349
Target:  5'- gGGCgGGa----GGUCAGGGgGCGGCCg -3'
miRNA:   3'- -CCGaCCaggugUUAGUCUCgUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 52894 0.66 0.950796
Target:  5'- -aCUGGU-CACGGcCGuGAGCuACGGCCg -3'
miRNA:   3'- ccGACCAgGUGUUaGU-CUCG-UGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 53470 0.7 0.81332
Target:  5'- aGGCgcgGGUgCCucguCGGUCAGGGCcggggguGCGGUCu -3'
miRNA:   3'- -CCGa--CCA-GGu---GUUAGUCUCG-------UGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 53593 0.67 0.927349
Target:  5'- uGGCaGGgaugCCGgGGaaAGGGCGCGGCa -3'
miRNA:   3'- -CCGaCCa---GGUgUUagUCUCGUGCCGg -5'
28774 5' -55.1 NC_006146.1 + 53982 0.72 0.694862
Target:  5'- gGGgUGGUCUGCGAucccccggcuuucccUCAGGGC-CGGCa -3'
miRNA:   3'- -CCgACCAGGUGUU---------------AGUCUCGuGCCGg -5'
28774 5' -55.1 NC_006146.1 + 54715 0.66 0.946574
Target:  5'- cGGCgGGcCCG-GGUCAGGGC--GGCCg -3'
miRNA:   3'- -CCGaCCaGGUgUUAGUCUCGugCCGG- -5'
28774 5' -55.1 NC_006146.1 + 55597 0.74 0.589255
Target:  5'- aGGuCUGGUCC-----CAGAGCAgGGCCu -3'
miRNA:   3'- -CC-GACCAGGuguuaGUCUCGUgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 55795 0.67 0.910446
Target:  5'- cGCUGG-CCAgCGAcUCGGGGCGguggaagaGGCCg -3'
miRNA:   3'- cCGACCaGGU-GUU-AGUCUCGUg-------CCGG- -5'
28774 5' -55.1 NC_006146.1 + 56237 0.76 0.444099
Target:  5'- aGCgGGUCCGCGGgggCGGAgGCGgGGCCg -3'
miRNA:   3'- cCGaCCAGGUGUUa--GUCU-CGUgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 56561 0.7 0.7783
Target:  5'- aGGCccccGUCCACcuccGUCAGGG-GCGGCCg -3'
miRNA:   3'- -CCGac--CAGGUGu---UAGUCUCgUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 57081 0.68 0.891438
Target:  5'- cGGCguaGUCCACGAgCGGcGCGuccUGGCCa -3'
miRNA:   3'- -CCGac-CAGGUGUUaGUCuCGU---GCCGG- -5'
28774 5' -55.1 NC_006146.1 + 57239 0.66 0.954788
Target:  5'- cGgUGGUCCACGGgcccgUGGucAGCAaGGCCa -3'
miRNA:   3'- cCgACCAGGUGUUa----GUC--UCGUgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 57391 0.69 0.855307
Target:  5'- gGGCUGGccCCGCGA-CcGuGCcCGGCCg -3'
miRNA:   3'- -CCGACCa-GGUGUUaGuCuCGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 58008 0.71 0.759542
Target:  5'- aGGCccgGGUCUcggccuuCGcgCAGAGCcCGGCCu -3'
miRNA:   3'- -CCGa--CCAGGu------GUuaGUCUCGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 58437 0.66 0.954788
Target:  5'- gGGUgGGUCUGgGGgucaCAGAGUAUGGCa -3'
miRNA:   3'- -CCGaCCAGGUgUUa---GUCUCGUGCCGg -5'
28774 5' -55.1 NC_006146.1 + 59243 0.67 0.927349
Target:  5'- uGGCcuccaUGGgCCugGGuguUCAGGGCcUGGCCg -3'
miRNA:   3'- -CCG-----ACCaGGugUU---AGUCUCGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 59731 0.71 0.759542
Target:  5'- aGGCcgGGUCCACGuacacgUAGAGgGaggaGGCCa -3'
miRNA:   3'- -CCGa-CCAGGUGUua----GUCUCgUg---CCGG- -5'
28774 5' -55.1 NC_006146.1 + 59917 0.7 0.768981
Target:  5'- uGCUGGUgCGCGGcUAcGAGCugGGUCu -3'
miRNA:   3'- cCGACCAgGUGUUaGU-CUCGugCCGG- -5'
28774 5' -55.1 NC_006146.1 + 61276 0.69 0.836962
Target:  5'- gGGCUGGUCUcacgggggccugucGCGuguuugCGGcGCGCGGCg -3'
miRNA:   3'- -CCGACCAGG--------------UGUua----GUCuCGUGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.