miRNA display CGI


Results 61 - 80 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28774 5' -55.1 NC_006146.1 + 61411 0.77 0.407914
Target:  5'- aGGCUGG-CUGCGGUgGccaacgcGGGCACGGCCg -3'
miRNA:   3'- -CCGACCaGGUGUUAgU-------CUCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 64138 0.7 0.805441
Target:  5'- cGCUGGUCUugaauuCAGUCAGGGCcuCGGa- -3'
miRNA:   3'- cCGACCAGGu-----GUUAGUCUCGu-GCCgg -5'
28774 5' -55.1 NC_006146.1 + 66280 0.71 0.740336
Target:  5'- cGCgGGUCCuccUGAUCAGAuaGuCGCGGCCa -3'
miRNA:   3'- cCGaCCAGGu--GUUAGUCU--C-GUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 66495 0.75 0.519483
Target:  5'- aGGCUGGUgCugAcggAUUuuGGCACGGCCu -3'
miRNA:   3'- -CCGACCAgGugU---UAGucUCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 67154 0.73 0.65032
Target:  5'- cGCUGG-CCGCuc-CuGAGCGCGGCg -3'
miRNA:   3'- cCGACCaGGUGuuaGuCUCGUGCCGg -5'
28774 5' -55.1 NC_006146.1 + 67978 0.68 0.8704
Target:  5'- aGGCa-GcCCACGAUCuuGGGGCGCaGCCa -3'
miRNA:   3'- -CCGacCaGGUGUUAG--UCUCGUGcCGG- -5'
28774 5' -55.1 NC_006146.1 + 68119 0.69 0.847456
Target:  5'- aGCcGGUCCGCGGUgAGcGGCGCcacGCCa -3'
miRNA:   3'- cCGaCCAGGUGUUAgUC-UCGUGc--CGG- -5'
28774 5' -55.1 NC_006146.1 + 70547 0.67 0.916317
Target:  5'- cGGCUGGcucgUCUugAGUCuGAGaauaaGGCCc -3'
miRNA:   3'- -CCGACC----AGGugUUAGuCUCgug--CCGG- -5'
28774 5' -55.1 NC_006146.1 + 71156 0.69 0.839412
Target:  5'- uGGCcucuuccgaugGGUCCGCGuccUCGGAGCACcGCg -3'
miRNA:   3'- -CCGa----------CCAGGUGUu--AGUCUCGUGcCGg -5'
28774 5' -55.1 NC_006146.1 + 71236 0.75 0.529277
Target:  5'- uGGCUGGucaacUCCugGGgccuggCGGGGgGCGGCCu -3'
miRNA:   3'- -CCGACC-----AGGugUUa-----GUCUCgUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 73027 0.66 0.936951
Target:  5'- aGGCUcaGGcccucguUCCACGGccCGGGGUcgGCGGCCc -3'
miRNA:   3'- -CCGA--CC-------AGGUGUUa-GUCUCG--UGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 73504 0.68 0.8704
Target:  5'- aGGCgcgGGgUCACGcgCAGGcuuacuuuuuGCAUGGCCa -3'
miRNA:   3'- -CCGa--CCaGGUGUuaGUCU----------CGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 83675 0.66 0.946574
Target:  5'- gGGUUGG-CCACc--CAGgugauGGCuGCGGCCg -3'
miRNA:   3'- -CCGACCaGGUGuuaGUC-----UCG-UGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 85550 0.68 0.876918
Target:  5'- gGGCaucUGGUCaCACGGUCGgGGGCACgugggguGGCa -3'
miRNA:   3'- -CCG---ACCAG-GUGUUAGU-CUCGUG-------CCGg -5'
28774 5' -55.1 NC_006146.1 + 86247 0.68 0.877632
Target:  5'- gGGCuUGGUUgACAG-CAGgcacgugggcAGCACGGCg -3'
miRNA:   3'- -CCG-ACCAGgUGUUaGUC----------UCGUGCCGg -5'
28774 5' -55.1 NC_006146.1 + 94012 0.66 0.946574
Target:  5'- uGGCUcccacgugcGGcCCgGCA---GGGGCACGGCCc -3'
miRNA:   3'- -CCGA---------CCaGG-UGUuagUCUCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 95142 0.72 0.687824
Target:  5'- gGGCuUGGUCCGCcugaacUCggcggcgaugucggAGAGCACGGUCc -3'
miRNA:   3'- -CCG-ACCAGGUGuu----AG--------------UCUCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 95321 0.66 0.937433
Target:  5'- aGGCgcggagGGUCUGgGAg-AGAuuuuGCGCGGCCa -3'
miRNA:   3'- -CCGa-----CCAGGUgUUagUCU----CGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 100029 0.66 0.950796
Target:  5'- cGGCggGGUCCGCGGcuUCu---CGCGGUCg -3'
miRNA:   3'- -CCGa-CCAGGUGUU--AGucucGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 100164 0.66 0.937433
Target:  5'- cGGCgGcGUCCGCGAggGGGGCAauaaGCCc -3'
miRNA:   3'- -CCGaC-CAGGUGUUagUCUCGUgc--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.