miRNA display CGI


Results 81 - 100 of 178 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28774 5' -55.1 NC_006146.1 + 106656 0.66 0.954789
Target:  5'- cGGCUGGUCaggGCcGUCcucuccccGGGCACGGg- -3'
miRNA:   3'- -CCGACCAGg--UGuUAGu-------CUCGUGCCgg -5'
28774 5' -55.1 NC_006146.1 + 108235 0.66 0.942121
Target:  5'- uGGCgGGUaCCAgAGUcCAGAGgACGGaCa -3'
miRNA:   3'- -CCGaCCA-GGUgUUA-GUCUCgUGCCgG- -5'
28774 5' -55.1 NC_006146.1 + 108871 0.69 0.82277
Target:  5'- cGGCUGGaaUGCGG-CAGAGgccgagcgcCGCGGCCa -3'
miRNA:   3'- -CCGACCagGUGUUaGUCUC---------GUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 109129 0.66 0.954789
Target:  5'- aGGCUGccGUCUugGgcAUCAGcAGCACcuGCCc -3'
miRNA:   3'- -CCGAC--CAGGugU--UAGUC-UCGUGc-CGG- -5'
28774 5' -55.1 NC_006146.1 + 109462 0.66 0.949553
Target:  5'- aGCUGGagcucccccacgagUCCACcacuGUCGugaaaccuGAGgGCGGCCa -3'
miRNA:   3'- cCGACC--------------AGGUGu---UAGU--------CUCgUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 109916 0.68 0.8704
Target:  5'- aGGCUgaGGaCCACAuccaccgccuuAUCGGAGUA-GGCCc -3'
miRNA:   3'- -CCGA--CCaGGUGU-----------UAGUCUCGUgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 110882 0.66 0.950796
Target:  5'- gGGCUcGGg-CGCAggCGGGGaCGgGGCCg -3'
miRNA:   3'- -CCGA-CCagGUGUuaGUCUC-GUgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 112192 0.66 0.946574
Target:  5'- uGCUGGUggCCugGGUaguauuguuggaCAGGGUgGCGGCCu -3'
miRNA:   3'- cCGACCA--GGugUUA------------GUCUCG-UGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 112572 0.72 0.700875
Target:  5'- aGGCUGGUCuCACAGau-GAGCAUcacaGCCa -3'
miRNA:   3'- -CCGACCAG-GUGUUaguCUCGUGc---CGG- -5'
28774 5' -55.1 NC_006146.1 + 112702 0.7 0.768982
Target:  5'- gGGuCUGGcCCGCAG-CAGGGCGucccugaGGCCc -3'
miRNA:   3'- -CC-GACCaGGUGUUaGUCUCGUg------CCGG- -5'
28774 5' -55.1 NC_006146.1 + 112742 0.68 0.8704
Target:  5'- aGGCaggUGGUCgAgGcgCAGaAGC-CGGCCa -3'
miRNA:   3'- -CCG---ACCAGgUgUuaGUC-UCGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 114361 0.66 0.954789
Target:  5'- gGGcCUGGcCCGCGugacgcGUCAGcuGCugAUGGCCg -3'
miRNA:   3'- -CC-GACCaGGUGU------UAGUCu-CG--UGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 114587 0.75 0.50976
Target:  5'- aGGCU-GUCCACGcUCAcuucguccAGCACGGCCa -3'
miRNA:   3'- -CCGAcCAGGUGUuAGUc-------UCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 114701 0.72 0.670645
Target:  5'- cGGCUcGUCCGCGAgacCcGGGCccugGCGGCCg -3'
miRNA:   3'- -CCGAcCAGGUGUUa--GuCUCG----UGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 114962 0.66 0.942121
Target:  5'- uGGCgggGGgcaCGCAG-CAGccCACGGCCg -3'
miRNA:   3'- -CCGa--CCag-GUGUUaGUCucGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 116151 0.68 0.86596
Target:  5'- uGGCUGGUCUcCu-UCGGcAGCGaccugagucuccccuCGGCCg -3'
miRNA:   3'- -CCGACCAGGuGuuAGUC-UCGU---------------GCCGG- -5'
28774 5' -55.1 NC_006146.1 + 116167 0.69 0.847456
Target:  5'- cGGCccUGGUCCGC--UCAGAGaa-GGCa -3'
miRNA:   3'- -CCG--ACCAGGUGuuAGUCUCgugCCGg -5'
28774 5' -55.1 NC_006146.1 + 117268 0.78 0.38346
Target:  5'- cGGCaGGUuccccaCCAuCAGUCGGuGCACGGCCc -3'
miRNA:   3'- -CCGaCCA------GGU-GUUAGUCuCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 117546 0.69 0.831181
Target:  5'- gGGcCUGGgCCGCAuucaggcuguUCAGGGUAUgGGCCg -3'
miRNA:   3'- -CC-GACCaGGUGUu---------AGUCUCGUG-CCGG- -5'
28774 5' -55.1 NC_006146.1 + 117894 0.67 0.921952
Target:  5'- aGGCUGGUCaucgACccccgCGGc-CACGGCCg -3'
miRNA:   3'- -CCGACCAGg---UGuua--GUCucGUGCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.