Results 121 - 140 of 178 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28774 | 5' | -55.1 | NC_006146.1 | + | 132759 | 0.69 | 0.831181 |
Target: 5'- gGGCcGGaugCCGCGGUCcc-GCACGGUCg -3' miRNA: 3'- -CCGaCCa--GGUGUUAGucuCGUGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 133643 | 0.71 | 0.720757 |
Target: 5'- uGGCUGGgCUuuGAUguGGuGCAUGGCCg -3' miRNA: 3'- -CCGACCaGGugUUAguCU-CGUGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 135163 | 0.7 | 0.814187 |
Target: 5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3' miRNA: 3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 135256 | 0.7 | 0.814187 |
Target: 5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3' miRNA: 3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 135349 | 0.7 | 0.814187 |
Target: 5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3' miRNA: 3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 135442 | 0.7 | 0.814187 |
Target: 5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3' miRNA: 3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 135535 | 0.7 | 0.814187 |
Target: 5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3' miRNA: 3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 135628 | 0.7 | 0.814187 |
Target: 5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3' miRNA: 3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 135721 | 0.68 | 0.877632 |
Target: 5'- cGCUGcccGUCCugGAgcUCGGGGCcgGgGGCCg -3' miRNA: 3'- cCGAC---CAGGugUU--AGUCUCG--UgCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 135813 | 0.7 | 0.814187 |
Target: 5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3' miRNA: 3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 135906 | 0.7 | 0.814187 |
Target: 5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3' miRNA: 3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 135999 | 0.7 | 0.814187 |
Target: 5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3' miRNA: 3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 136092 | 0.7 | 0.814187 |
Target: 5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3' miRNA: 3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 136185 | 0.7 | 0.814187 |
Target: 5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3' miRNA: 3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 136278 | 0.7 | 0.814187 |
Target: 5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3' miRNA: 3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 136371 | 0.7 | 0.814187 |
Target: 5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3' miRNA: 3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 136464 | 0.7 | 0.814187 |
Target: 5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3' miRNA: 3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 136557 | 0.7 | 0.814187 |
Target: 5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3' miRNA: 3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 136650 | 0.7 | 0.814187 |
Target: 5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3' miRNA: 3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 136742 | 0.7 | 0.814187 |
Target: 5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3' miRNA: 3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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