miRNA display CGI


Results 61 - 80 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28774 5' -55.1 NC_006146.1 + 129279 0.7 0.805441
Target:  5'- gGGCUGGUCUGCGccCGG-GCccaGCGGaCCa -3'
miRNA:   3'- -CCGACCAGGUGUuaGUCuCG---UGCC-GG- -5'
28774 5' -55.1 NC_006146.1 + 128827 0.71 0.730589
Target:  5'- cGGCgcGGUCCAgGAgCAGguaAGCcCGGCCa -3'
miRNA:   3'- -CCGa-CCAGGUgUUaGUC---UCGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 128550 0.68 0.898004
Target:  5'- cGGCgcgGGagaUCCugGAgcggCAGuuCGCGGCCu -3'
miRNA:   3'- -CCGa--CC---AGGugUUa---GUCucGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 128392 0.67 0.927349
Target:  5'- aGGCaGuagCCGCAGUCcaggcAGAaCACGGCCa -3'
miRNA:   3'- -CCGaCca-GGUGUUAG-----UCUcGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 128247 0.73 0.608546
Target:  5'- gGGCgag-CCGCAGUUGGAGCaguacacGCGGCCg -3'
miRNA:   3'- -CCGaccaGGUGUUAGUCUCG-------UGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 127404 0.74 0.559041
Target:  5'- gGGCUGGgccCCGCcgcCGGAGCcggugucaACGGCCg -3'
miRNA:   3'- -CCGACCa--GGUGuuaGUCUCG--------UGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 127137 0.68 0.877632
Target:  5'- aGGCUGcUCCGCGu--GGAGCuggACGGCg -3'
miRNA:   3'- -CCGACcAGGUGUuagUCUCG---UGCCGg -5'
28774 5' -55.1 NC_006146.1 + 124759 1.15 0.001742
Target:  5'- gGGCUGGUCCACAAUCAGAGCACGGCCa -3'
miRNA:   3'- -CCGACCAGGUGUUAGUCUCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 124561 0.66 0.937433
Target:  5'- cGC-GGUCCuCAccuaccggcugGUCAGaAGCcCGGCCg -3'
miRNA:   3'- cCGaCCAGGuGU-----------UAGUC-UCGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 124175 0.68 0.8704
Target:  5'- aGCgUGGccUCCGCccgccUCGGAGCcgccGCGGCCg -3'
miRNA:   3'- cCG-ACC--AGGUGuu---AGUCUCG----UGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 123431 0.69 0.847457
Target:  5'- cGGCgagcugaagaGGcUCCugGAgcUCgAGAGCAUGGCCc -3'
miRNA:   3'- -CCGa---------CC-AGGugUU--AG-UCUCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 123256 0.71 0.749991
Target:  5'- cGCUGGgccgggCCGCGGcCAGAG-ACGGCUc -3'
miRNA:   3'- cCGACCa-----GGUGUUaGUCUCgUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 122775 0.68 0.898005
Target:  5'- gGGCUGGccgaacUCCAagaGAagAGAcGgGCGGCCg -3'
miRNA:   3'- -CCGACC------AGGUg--UUagUCU-CgUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 122532 0.68 0.8704
Target:  5'- cGGgUGGUUCGCGGaacUCGaGGC-CGGCCc -3'
miRNA:   3'- -CCgACCAGGUGUU---AGUcUCGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 120799 0.69 0.839412
Target:  5'- cGCcGGUCCGCGuggcCGGAcaaGCGgGGCCg -3'
miRNA:   3'- cCGaCCAGGUGUua--GUCU---CGUgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 120548 0.67 0.916317
Target:  5'- cGCUGGaucUCCACGGgcuggaaaacCAGAGCcUGGUCa -3'
miRNA:   3'- cCGACC---AGGUGUUa---------GUCUCGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 118386 0.67 0.903093
Target:  5'- aGCcaaGGUCUGCAGgauaaacaugggCGGAGCAUGGCg -3'
miRNA:   3'- cCGa--CCAGGUGUUa-----------GUCUCGUGCCGg -5'
28774 5' -55.1 NC_006146.1 + 118075 0.77 0.435106
Target:  5'- cGGCUcGGcccUCCGCAuccuGGGCACGGCCu -3'
miRNA:   3'- -CCGA-CC---AGGUGUuaguCUCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 117894 0.67 0.921952
Target:  5'- aGGCUGGUCaucgACccccgCGGc-CACGGCCg -3'
miRNA:   3'- -CCGACCAGg---UGuua--GUCucGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 117546 0.69 0.831181
Target:  5'- gGGcCUGGgCCGCAuucaggcuguUCAGGGUAUgGGCCg -3'
miRNA:   3'- -CC-GACCaGGUGUu---------AGUCUCGUG-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.