miRNA display CGI


Results 61 - 80 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28774 5' -55.1 NC_006146.1 + 136371 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 136650 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 3801 0.7 0.787488
Target:  5'- --gUGGcCCACAGUCAGGuCugGGUCa -3'
miRNA:   3'- ccgACCaGGUGUUAGUCUcGugCCGG- -5'
28774 5' -55.1 NC_006146.1 + 53470 0.7 0.81332
Target:  5'- aGGCgcgGGUgCCucguCGGUCAGGGCcggggguGCGGUCu -3'
miRNA:   3'- -CCGa--CCA-GGu---GUUAGUCUCG-------UGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 135256 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 135349 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 135628 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 135813 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 135999 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 136092 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 149631 0.66 0.954788
Target:  5'- gGGC--GUCCGCcagcaccaGGUC-GAGCACGcGCCg -3'
miRNA:   3'- -CCGacCAGGUG--------UUAGuCUCGUGC-CGG- -5'
28774 5' -55.1 NC_006146.1 + 13711 0.67 0.904342
Target:  5'- cGGCcucucgGGUCCAC---CAG-GC-CGGCCg -3'
miRNA:   3'- -CCGa-----CCAGGUGuuaGUCuCGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 137021 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 137300 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 68119 0.69 0.847456
Target:  5'- aGCcGGUCCGCGGUgAGcGGCGCcacGCCa -3'
miRNA:   3'- cCGaCCAGGUGUUAgUC-UCGUGc--CGG- -5'
28774 5' -55.1 NC_006146.1 + 57391 0.69 0.855307
Target:  5'- gGGCUGGccCCGCGA-CcGuGCcCGGCCg -3'
miRNA:   3'- -CCGACCa-GGUGUUaGuCuCGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 67978 0.68 0.8704
Target:  5'- aGGCa-GcCCACGAUCuuGGGGCGCaGCCa -3'
miRNA:   3'- -CCGacCaGGUGUUAG--UCUCGUGcCGG- -5'
28774 5' -55.1 NC_006146.1 + 148128 0.68 0.874765
Target:  5'- uGUUGGagugCCGCAugggcuucgugcugGUCAGGGCccgggucuucucuACGGCCa -3'
miRNA:   3'- cCGACCa---GGUGU--------------UAGUCUCG-------------UGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 170526 0.68 0.884646
Target:  5'- gGGCgGGgCCugAG--GGGGCGCGGCg -3'
miRNA:   3'- -CCGaCCaGGugUUagUCUCGUGCCGg -5'
28774 5' -55.1 NC_006146.1 + 169594 0.68 0.891438
Target:  5'- cGGgUGGggCCugAG--GGGGCGCGGCg -3'
miRNA:   3'- -CCgACCa-GGugUUagUCUCGUGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.