miRNA display CGI


Results 81 - 100 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28774 5' -55.1 NC_006146.1 + 129650 0.68 0.8704
Target:  5'- cGGCUccgucuggGGUCUguac-CAGAGCAgGGCCg -3'
miRNA:   3'- -CCGA--------CCAGGuguuaGUCUCGUgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 86247 0.68 0.877632
Target:  5'- gGGCuUGGUUgACAG-CAGgcacgugggcAGCACGGCg -3'
miRNA:   3'- -CCG-ACCAGgUGUUaGUC----------UCGUGCCGg -5'
28774 5' -55.1 NC_006146.1 + 127137 0.68 0.877632
Target:  5'- aGGCUGcUCCGCGu--GGAGCuggACGGCg -3'
miRNA:   3'- -CCGACcAGGUGUuagUCUCG---UGCCGg -5'
28774 5' -55.1 NC_006146.1 + 170526 0.68 0.884646
Target:  5'- gGGCgGGgCCugAG--GGGGCGCGGCg -3'
miRNA:   3'- -CCGaCCaGGugUUagUCUCGUGCCGg -5'
28774 5' -55.1 NC_006146.1 + 33990 0.68 0.889424
Target:  5'- cGCUGGUCCggugcaccuggaagGCAggggggggGUCGGGGCagGCGGgCg -3'
miRNA:   3'- cCGACCAGG--------------UGU--------UAGUCUCG--UGCCgG- -5'
28774 5' -55.1 NC_006146.1 + 118386 0.67 0.903093
Target:  5'- aGCcaaGGUCUGCAGgauaaacaugggCGGAGCAUGGCg -3'
miRNA:   3'- cCGa--CCAGGUGUUa-----------GUCUCGUGCCGg -5'
28774 5' -55.1 NC_006146.1 + 13711 0.67 0.904342
Target:  5'- cGGCcucucgGGUCCAC---CAG-GC-CGGCCg -3'
miRNA:   3'- -CCGa-----CCAGGUGuuaGUCuCGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 116167 0.69 0.847456
Target:  5'- cGGCccUGGUCCGC--UCAGAGaa-GGCa -3'
miRNA:   3'- -CCG--ACCAGGUGuuAGUCUCgugCCGg -5'
28774 5' -55.1 NC_006146.1 + 68119 0.69 0.847456
Target:  5'- aGCcGGUCCGCGGUgAGcGGCGCcacGCCa -3'
miRNA:   3'- cCGaCCAGGUGUUAgUC-UCGUGc--CGG- -5'
28774 5' -55.1 NC_006146.1 + 117546 0.69 0.831181
Target:  5'- gGGcCUGGgCCGCAuucaggcuguUCAGGGUAUgGGCCg -3'
miRNA:   3'- -CC-GACCaGGUGUu---------AGUCUCGUG-CCGG- -5'
28774 5' -55.1 NC_006146.1 + 159401 0.67 0.910446
Target:  5'- cGCU-GUCCACGAUCAu-G-ACGGCCc -3'
miRNA:   3'- cCGAcCAGGUGUUAGUcuCgUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 42725 0.67 0.921952
Target:  5'- gGGCUGGcagCCGCGGauccgggCGGuGCugccgcacaacGCGGCCu -3'
miRNA:   3'- -CCGACCa--GGUGUUa------GUCuCG-----------UGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 52706 0.67 0.927349
Target:  5'- gGGCgGGa----GGUCAGGGgGCGGCCg -3'
miRNA:   3'- -CCGaCCaggugUUAGUCUCgUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 157114 0.66 0.932509
Target:  5'- cGGCgucGUCCAgAGUCAGcgaGGCGCacGCCu -3'
miRNA:   3'- -CCGac-CAGGUgUUAGUC---UCGUGc-CGG- -5'
28774 5' -55.1 NC_006146.1 + 149631 0.66 0.954788
Target:  5'- gGGC--GUCCGCcagcaccaGGUC-GAGCACGcGCCg -3'
miRNA:   3'- -CCGacCAGGUG--------UUAGuCUCGUGC-CGG- -5'
28774 5' -55.1 NC_006146.1 + 136928 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 137021 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 137207 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 137300 0.7 0.814187
Target:  5'- cGCUgcccGGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGA----CCAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 47825 0.69 0.831181
Target:  5'- gGGCUcGGgCUGC---CAGAGCGCGGCUc -3'
miRNA:   3'- -CCGA-CCaGGUGuuaGUCUCGUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.