miRNA display CGI


Results 101 - 120 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28774 5' -55.1 NC_006146.1 + 137570 0.66 0.950796
Target:  5'- uGCcgGGUCCGCugcccGGUCcuGGAGCucgGGCCg -3'
miRNA:   3'- cCGa-CCAGGUG-----UUAG--UCUCGug-CCGG- -5'
28774 5' -55.1 NC_006146.1 + 33326 0.66 0.954788
Target:  5'- gGGCUccggGGUCCGgGugcucCGGGGCAgccgggUGGCCg -3'
miRNA:   3'- -CCGA----CCAGGUgUua---GUCUCGU------GCCGG- -5'
28774 5' -55.1 NC_006146.1 + 57239 0.66 0.954788
Target:  5'- cGgUGGUCCACGGgcccgUGGucAGCAaGGCCa -3'
miRNA:   3'- cCgACCAGGUGUUa----GUC--UCGUgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 58437 0.66 0.954788
Target:  5'- gGGUgGGUCUGgGGgucaCAGAGUAUGGCa -3'
miRNA:   3'- -CCGaCCAGGUgUUa---GUCUCGUGCCGg -5'
28774 5' -55.1 NC_006146.1 + 42725 0.67 0.921952
Target:  5'- gGGCUGGcagCCGCGGauccgggCGGuGCugccgcacaacGCGGCCu -3'
miRNA:   3'- -CCGACCa--GGUGUUa------GUCuCG-----------UGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 117894 0.67 0.921952
Target:  5'- aGGCUGGUCaucgACccccgCGGc-CACGGCCg -3'
miRNA:   3'- -CCGACCAGg---UGuua--GUCucGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 167729 0.68 0.891438
Target:  5'- cGGgUGGggCCugAG--GGGGCGCGGCg -3'
miRNA:   3'- -CCgACCa-GGugUUagUCUCGUGCCGg -5'
28774 5' -55.1 NC_006146.1 + 169594 0.68 0.891438
Target:  5'- cGGgUGGggCCugAG--GGGGCGCGGCg -3'
miRNA:   3'- -CCgACCa-GGugUUagUCUCGUGCCGg -5'
28774 5' -55.1 NC_006146.1 + 128550 0.68 0.898004
Target:  5'- cGGCgcgGGagaUCCugGAgcggCAGuuCGCGGCCu -3'
miRNA:   3'- -CCGa--CC---AGGugUUa---GUCucGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 127137 0.68 0.877632
Target:  5'- aGGCUGcUCCGCGu--GGAGCuggACGGCg -3'
miRNA:   3'- -CCGACcAGGUGUuagUCUCG---UGCCGg -5'
28774 5' -55.1 NC_006146.1 + 118386 0.67 0.903093
Target:  5'- aGCcaaGGUCUGCAGgauaaacaugggCGGAGCAUGGCg -3'
miRNA:   3'- cCGa--CCAGGUGUUa-----------GUCUCGUGCCGg -5'
28774 5' -55.1 NC_006146.1 + 26022 0.67 0.904342
Target:  5'- cGGCcucucgGGUCCAC---CAG-GC-CGGCCg -3'
miRNA:   3'- -CCGa-----CCAGGUGuuaGUCuCGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 29100 0.67 0.904342
Target:  5'- cGGCcucucgGGUCCAC---CAG-GC-CGGCCg -3'
miRNA:   3'- -CCGa-----CCAGGUGuuaGUCuCGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 48069 0.67 0.906811
Target:  5'- aGCgugcGGUCCACGuacucgcucacggCGGccgacAGCGCGGCCu -3'
miRNA:   3'- cCGa---CCAGGUGUua-----------GUC-----UCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 55795 0.67 0.910446
Target:  5'- cGCUGG-CCAgCGAcUCGGGGCGguggaagaGGCCg -3'
miRNA:   3'- cCGACCaGGU-GUU-AGUCUCGUg-------CCGG- -5'
28774 5' -55.1 NC_006146.1 + 120548 0.67 0.916317
Target:  5'- cGCUGGaucUCCACGGgcuggaaaacCAGAGCcUGGUCa -3'
miRNA:   3'- cCGACC---AGGUGUUa---------GUCUCGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 135721 0.68 0.877632
Target:  5'- cGCUGcccGUCCugGAgcUCGGGGCcgGgGGCCg -3'
miRNA:   3'- cCGAC---CAGGugUU--AGUCUCG--UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 15587 0.68 0.8704
Target:  5'- aGGC-GcGUCgGCG---AGGGCGCGGCCu -3'
miRNA:   3'- -CCGaC-CAGgUGUuagUCUCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 124175 0.68 0.8704
Target:  5'- aGCgUGGccUCCGCccgccUCGGAGCcgccGCGGCCg -3'
miRNA:   3'- cCG-ACC--AGGUGuu---AGUCUCG----UGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 165956 0.84 0.171805
Target:  5'- uGGCcccUGGUCCcCGGggcaCAGAGCACGGCCa -3'
miRNA:   3'- -CCG---ACCAGGuGUUa---GUCUCGUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.