Results 41 - 60 of 178 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28774 | 5' | -55.1 | NC_006146.1 | + | 110882 | 0.66 | 0.950796 |
Target: 5'- gGGCUcGGg-CGCAggCGGGGaCGgGGCCg -3' miRNA: 3'- -CCGA-CCagGUGUuaGUCUC-GUgCCGG- -5' |
|||||||
28774 | 5' | -55.1 | NC_006146.1 | + | 52894 | 0.66 | 0.950796 |
Target: 5'- -aCUGGU-CACGGcCGuGAGCuACGGCCg -3' miRNA: 3'- ccGACCAgGUGUUaGU-CUCG-UGCCGG- -5' |
|||||||
28774 | 5' | -55.1 | NC_006146.1 | + | 109129 | 0.66 | 0.954789 |
Target: 5'- aGGCUGccGUCUugGgcAUCAGcAGCACcuGCCc -3' miRNA: 3'- -CCGAC--CAGGugU--UAGUC-UCGUGc-CGG- -5' |
|||||||
28774 | 5' | -55.1 | NC_006146.1 | + | 114361 | 0.66 | 0.954789 |
Target: 5'- gGGcCUGGcCCGCGugacgcGUCAGcuGCugAUGGCCg -3' miRNA: 3'- -CC-GACCaGGUGU------UAGUCu-CG--UGCCGG- -5' |
|||||||
28774 | 5' | -55.1 | NC_006146.1 | + | 41391 | 0.66 | 0.954789 |
Target: 5'- cGGCcGcUCCACGAacccgCAGAcGUagACGGCCg -3' miRNA: 3'- -CCGaCcAGGUGUUa----GUCU-CG--UGCCGG- -5' |
|||||||
28774 | 5' | -55.1 | NC_006146.1 | + | 137509 | 0.67 | 0.927349 |
Target: 5'- aGGCgGG-CCACcccccacccgGAgCGGGGCAgCGGCCc -3' miRNA: 3'- -CCGaCCaGGUG----------UUaGUCUCGU-GCCGG- -5' |
|||||||
28774 | 5' | -55.1 | NC_006146.1 | + | 128392 | 0.67 | 0.927349 |
Target: 5'- aGGCaGuagCCGCAGUCcaggcAGAaCACGGCCa -3' miRNA: 3'- -CCGaCca-GGUGUUAG-----UCUcGUGCCGG- -5' |
|||||||
28774 | 5' | -55.1 | NC_006146.1 | + | 47380 | 0.68 | 0.8704 |
Target: 5'- gGGCaugaGGUCCuACgGGUUGGAGCGucUGGCCg -3' miRNA: 3'- -CCGa---CCAGG-UG-UUAGUCUCGU--GCCGG- -5' |
|||||||
28774 | 5' | -55.1 | NC_006146.1 | + | 73504 | 0.68 | 0.8704 |
Target: 5'- aGGCgcgGGgUCACGcgCAGGcuuacuuuuuGCAUGGCCa -3' miRNA: 3'- -CCGa--CCaGGUGUuaGUCU----------CGUGCCGG- -5' |
|||||||
28774 | 5' | -55.1 | NC_006146.1 | + | 112742 | 0.68 | 0.8704 |
Target: 5'- aGGCaggUGGUCgAgGcgCAGaAGC-CGGCCa -3' miRNA: 3'- -CCG---ACCAGgUgUuaGUC-UCGuGCCGG- -5' |
|||||||
28774 | 5' | -55.1 | NC_006146.1 | + | 122532 | 0.68 | 0.8704 |
Target: 5'- cGGgUGGUUCGCGGaacUCGaGGC-CGGCCc -3' miRNA: 3'- -CCgACCAGGUGUU---AGUcUCGuGCCGG- -5' |
|||||||
28774 | 5' | -55.1 | NC_006146.1 | + | 57081 | 0.68 | 0.891438 |
Target: 5'- cGGCguaGUCCACGAgCGGcGCGuccUGGCCa -3' miRNA: 3'- -CCGac-CAGGUGUUaGUCuCGU---GCCGG- -5' |
|||||||
28774 | 5' | -55.1 | NC_006146.1 | + | 122775 | 0.68 | 0.898005 |
Target: 5'- gGGCUGGccgaacUCCAagaGAagAGAcGgGCGGCCg -3' miRNA: 3'- -CCGACC------AGGUg--UUagUCU-CgUGCCGG- -5' |
|||||||
28774 | 5' | -55.1 | NC_006146.1 | + | 24369 | 0.67 | 0.904342 |
Target: 5'- uGGCgcagGG-CCAgcucCAGGGCGCGGCg -3' miRNA: 3'- -CCGa---CCaGGUguuaGUCUCGUGCCGg -5' |
|||||||
28774 | 5' | -55.1 | NC_006146.1 | + | 29000 | 0.67 | 0.904342 |
Target: 5'- uGCcgGGUCCugGAaCAGcggcgcuccuaGGCACGGaCCa -3' miRNA: 3'- cCGa-CCAGGugUUaGUC-----------UCGUGCC-GG- -5' |
|||||||
28774 | 5' | -55.1 | NC_006146.1 | + | 168482 | 0.67 | 0.904342 |
Target: 5'- cGGCcucacGUCCACGGUCGGGG---GGCCg -3' miRNA: 3'- -CCGac---CAGGUGUUAGUCUCgugCCGG- -5' |
|||||||
28774 | 5' | -55.1 | NC_006146.1 | + | 14815 | 0.67 | 0.910447 |
Target: 5'- cGGCcGGgCCGgAGg-AGGGCACGGUCu -3' miRNA: 3'- -CCGaCCaGGUgUUagUCUCGUGCCGG- -5' |
|||||||
28774 | 5' | -55.1 | NC_006146.1 | + | 40538 | 0.67 | 0.916317 |
Target: 5'- aGGUUGGUCUGCAG-CAGGGUcaugaaggugguGCGGg- -3' miRNA: 3'- -CCGACCAGGUGUUaGUCUCG------------UGCCgg -5' |
|||||||
28774 | 5' | -55.1 | NC_006146.1 | + | 15142 | 0.67 | 0.921399 |
Target: 5'- cGGCggGGUCUACAGcuccUCGGgcgacgccguggaAGCGCugaaGGCCg -3' miRNA: 3'- -CCGa-CCAGGUGUU----AGUC-------------UCGUG----CCGG- -5' |
|||||||
28774 | 5' | -55.1 | NC_006146.1 | + | 53593 | 0.67 | 0.927349 |
Target: 5'- uGGCaGGgaugCCGgGGaaAGGGCGCGGCa -3' miRNA: 3'- -CCGaCCa---GGUgUUagUCUCGUGCCGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home