miRNA display CGI


Results 21 - 40 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28775 3' -55.2 NC_006146.1 + 132615 0.66 0.943591
Target:  5'- aGAUGGAAag---GGCCGGCAgugugGCCCg -3'
miRNA:   3'- aCUACCUUcuggaCCGGCUGU-----UGGGg -5'
28775 3' -55.2 NC_006146.1 + 157252 0.66 0.943591
Target:  5'- aGGUGGccGcuGCCUGuGuCCGGCGcuugaucgucaGCCCCa -3'
miRNA:   3'- aCUACCuuC--UGGAC-C-GGCUGU-----------UGGGG- -5'
28775 3' -55.2 NC_006146.1 + 42836 0.66 0.943591
Target:  5'- ---aGGAucaGGGCCUcgagGGCCGcCAGgCCCa -3'
miRNA:   3'- acuaCCU---UCUGGA----CCGGCuGUUgGGG- -5'
28775 3' -55.2 NC_006146.1 + 76094 0.66 0.943591
Target:  5'- cUGGUGGGcaacccccGGGCCUcGGCCuacgugGACGugGCCCg -3'
miRNA:   3'- -ACUACCU--------UCUGGA-CCGG------CUGU--UGGGg -5'
28775 3' -55.2 NC_006146.1 + 122025 0.66 0.943591
Target:  5'- aGA-GGcgcAGGCCUggcgccuggaGGCCGACGGCUUCg -3'
miRNA:   3'- aCUaCCu--UCUGGA----------CCGGCUGUUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 21621 0.66 0.940856
Target:  5'- aGAUGGccgAGGACCcGGCCuacgcggagcggcacGGCAuUCCCg -3'
miRNA:   3'- aCUACC---UUCUGGaCCGG---------------CUGUuGGGG- -5'
28775 3' -55.2 NC_006146.1 + 26030 0.66 0.938986
Target:  5'- ---cGGGuccaccAGGCC-GGCCGGaggGACCCCg -3'
miRNA:   3'- acuaCCU------UCUGGaCCGGCUg--UUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 130132 0.66 0.938986
Target:  5'- aUGAUGGAGuuCUUGGgcagguccacguCCGuggcCAGCCCCa -3'
miRNA:   3'- -ACUACCUUcuGGACC------------GGCu---GUUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 29108 0.66 0.938986
Target:  5'- ---cGGGuccaccAGGCC-GGCCGGaggGACCCCg -3'
miRNA:   3'- acuaCCU------UCUGGaCCGGCUg--UUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 16797 0.66 0.938986
Target:  5'- ---cGGGuccaccAGGCC-GGCCGGaggGACCCCg -3'
miRNA:   3'- acuaCCU------UCUGGaCCGGCUg--UUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 3318 0.66 0.938986
Target:  5'- ---gGGGAGGCCcGGCCuccacacACGGCCUCu -3'
miRNA:   3'- acuaCCUUCUGGaCCGGc------UGUUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 152245 0.66 0.938986
Target:  5'- --cUGcGAAGGCCgGGCauGCGAUCCCu -3'
miRNA:   3'- acuAC-CUUCUGGaCCGgcUGUUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 2386 0.66 0.938986
Target:  5'- ---gGGGAGGCCcGGCCuccacacACGGCCUCu -3'
miRNA:   3'- acuaCCUUCUGGaCCGGc------UGUUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 16911 0.66 0.938986
Target:  5'- ---cGGGuccaucAGGCC-GGCCGGaggGACCCCg -3'
miRNA:   3'- acuaCCU------UCUGGaCCGGCUg--UUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 78825 0.66 0.938986
Target:  5'- ------cAGGCCgGGCCGccccccgcaGCAGCCCCa -3'
miRNA:   3'- acuaccuUCUGGaCCGGC---------UGUUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 23066 0.66 0.938986
Target:  5'- ---cGGGuccaucAGGCC-GGCCGGaggGACCCCg -3'
miRNA:   3'- acuaCCU------UCUGGaCCGGCUg--UUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 67137 0.66 0.938986
Target:  5'- aGA-GGAAGACCgggagccGCUGGCcGCUCCu -3'
miRNA:   3'- aCUaCCUUCUGGac-----CGGCUGuUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 1454 0.66 0.938986
Target:  5'- ---gGGGAGGCCcGGCCuccacacACGGCCUCu -3'
miRNA:   3'- acuaCCUUCUGGaCCGGc------UGUUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 523 0.66 0.938986
Target:  5'- ---gGGGAGGCCcGGCCuccacacACGGCCUCu -3'
miRNA:   3'- acuaCCUUCUGGaCCGGc------UGUUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 29222 0.66 0.938986
Target:  5'- ---cGGGuccaucAGGCC-GGCCGGaggGACCCCg -3'
miRNA:   3'- acuaCCU------UCUGGaCCGGCUg--UUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.