miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28775 5' -61.6 NC_006146.1 + 71705 0.68 0.522488
Target:  5'- -cGGCcuccCUGgaGGCGgACGCCACCUg -3'
miRNA:   3'- uaCUGc---GACgaCCGCgUGCGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 56860 0.68 0.522488
Target:  5'- -cGGCaGCUuugGCUGGgGCugGCgGCCCc -3'
miRNA:   3'- uaCUG-CGA---CGACCgCGugCGgUGGGa -5'
28775 5' -61.6 NC_006146.1 + 132061 0.68 0.522488
Target:  5'- --cGCGCUGCUGGaCGUGaGCUGCCCc -3'
miRNA:   3'- uacUGCGACGACC-GCGUgCGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 126116 0.68 0.540774
Target:  5'- -aGACGCUGCgccccccUGaGCccgGCACGgCACCCUc -3'
miRNA:   3'- uaCUGCGACG-------AC-CG---CGUGCgGUGGGA- -5'
28775 5' -61.6 NC_006146.1 + 159328 0.68 0.532084
Target:  5'- uUGAgGCUgGCcGGCGUcucguGCGCCGCCUc -3'
miRNA:   3'- uACUgCGA-CGaCCGCG-----UGCGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 128460 0.68 0.512959
Target:  5'- -cGGcCGCcaUGCUGGCgGCGCGC-ACCCa -3'
miRNA:   3'- uaCU-GCG--ACGACCG-CGUGCGgUGGGa -5'
28775 5' -61.6 NC_006146.1 + 55939 0.68 0.494122
Target:  5'- cGUGG-GCUGCUGcGUGCcccccgccauCGCCGCCCa -3'
miRNA:   3'- -UACUgCGACGAC-CGCGu---------GCGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 168443 0.67 0.571044
Target:  5'- -gGGgGCaggGCUGGCGCcgggccGCGCC-CCCg -3'
miRNA:   3'- uaCUgCGa--CGACCGCG------UGCGGuGGGa -5'
28775 5' -61.6 NC_006146.1 + 167511 0.67 0.571044
Target:  5'- -gGGgGCaggGCUGGCGCcgggccGCGCC-CCCg -3'
miRNA:   3'- uaCUgCGa--CGACCGCG------UGCGGuGGGa -5'
28775 5' -61.6 NC_006146.1 + 136722 0.67 0.610654
Target:  5'- cUGGCccaggguccgGCUGggGGCGCACcccCCACCCUc -3'
miRNA:   3'- uACUG----------CGACgaCCGCGUGc--GGUGGGA- -5'
28775 5' -61.6 NC_006146.1 + 41481 0.67 0.610654
Target:  5'- gGUGAUGUUGCUgggccuuggGGUGCGCGgggacgaCGCCCg -3'
miRNA:   3'- -UACUGCGACGA---------CCGCGUGCg------GUGGGa -5'
28775 5' -61.6 NC_006146.1 + 21255 0.67 0.610654
Target:  5'- --cGCGCUGCcGGCGCGUGCUcgACCUg -3'
miRNA:   3'- uacUGCGACGaCCGCGUGCGG--UGGGa -5'
28775 5' -61.6 NC_006146.1 + 16201 0.67 0.610654
Target:  5'- gGUGG-GCUGCaucugGGCGCAgaCCACCCa -3'
miRNA:   3'- -UACUgCGACGa----CCGCGUgcGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 115553 0.67 0.600712
Target:  5'- gGUGGCggggGCUGgaGGCGaC-CGCgGCCCUa -3'
miRNA:   3'- -UACUG----CGACgaCCGC-GuGCGgUGGGA- -5'
28775 5' -61.6 NC_006146.1 + 25855 0.67 0.600712
Target:  5'- --aGCGCcaggGCUGcGCGCucACGCUGCCCg -3'
miRNA:   3'- uacUGCGa---CGAC-CGCG--UGCGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 92251 0.67 0.600712
Target:  5'- uGUGGCuGCUGCUGGgGgGCGggcCCGgCCUg -3'
miRNA:   3'- -UACUG-CGACGACCgCgUGC---GGUgGGA- -5'
28775 5' -61.6 NC_006146.1 + 3690 0.67 0.580901
Target:  5'- -aGACGgggGaaGGcCGCGCGCCGCCCc -3'
miRNA:   3'- uaCUGCga-CgaCC-GCGUGCGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 2758 0.67 0.580901
Target:  5'- -aGACGgggGaaGGcCGCGCGCCGCCCc -3'
miRNA:   3'- uaCUGCga-CgaCC-GCGUGCGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 1826 0.67 0.580901
Target:  5'- -aGACGgggGaaGGcCGCGCGCCGCCCc -3'
miRNA:   3'- uaCUGCga-CgaCC-GCGUGCGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 894 0.67 0.580901
Target:  5'- -aGACGgggGaaGGcCGCGCGCCGCCCc -3'
miRNA:   3'- uaCUGCga-CgaCC-GCGUGCGGUGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.