miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28775 5' -61.6 NC_006146.1 + 142178 0.66 0.660451
Target:  5'- uGUGGCuGCUGCUGGUGCuag--ACCCUa -3'
miRNA:   3'- -UACUG-CGACGACCGCGugcggUGGGA- -5'
28775 5' -61.6 NC_006146.1 + 168110 0.67 0.610654
Target:  5'- -gGACGggagGCcGGCGCGCGCCcgggguCCCg -3'
miRNA:   3'- uaCUGCga--CGaCCGCGUGCGGu-----GGGa -5'
28775 5' -61.6 NC_006146.1 + 98411 0.67 0.591783
Target:  5'- -aGGCGCUGCaGccaggcacggggaaGCGCccagaaccgguuucgGCGCCGCCCg -3'
miRNA:   3'- uaCUGCGACGaC--------------CGCG---------------UGCGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 168663 0.66 0.660451
Target:  5'- gGUGGgGcCUGagggGGCGCGgcgauuguCGCCGCCCUc -3'
miRNA:   3'- -UACUgC-GACga--CCGCGU--------GCGGUGGGA- -5'
28775 5' -61.6 NC_006146.1 + 169375 0.67 0.571044
Target:  5'- -gGGgGCaggGCUGGCGCcgggccGCGCC-CCCg -3'
miRNA:   3'- uaCUgCGa--CGACCGCG------UGCGGuGGGa -5'
28775 5' -61.6 NC_006146.1 + 59587 0.66 0.640544
Target:  5'- uUGACggGCUGCUcGGaCGCAUuCUACCCa -3'
miRNA:   3'- uACUG--CGACGA-CC-GCGUGcGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 169042 0.67 0.610654
Target:  5'- -gGACGggagGCcGGCGCGCGCCcgggguCCCg -3'
miRNA:   3'- uaCUGCga--CGaCCGCGUGCGGu-----GGGa -5'
28775 5' -61.6 NC_006146.1 + 167511 0.67 0.571044
Target:  5'- -gGGgGCaggGCUGGCGCcgggccGCGCC-CCCg -3'
miRNA:   3'- uaCUgCGa--CGACCGCG------UGCGGuGGGa -5'
28775 5' -61.6 NC_006146.1 + 143268 0.66 0.660451
Target:  5'- gGUGACGCUgGCccGGaacuuccCugGCCACCCa -3'
miRNA:   3'- -UACUGCGA-CGa-CCgc-----GugCGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 33161 0.66 0.660451
Target:  5'- -gGugGCccgGCUGG-GCAcCGCCGCgCCg -3'
miRNA:   3'- uaCugCGa--CGACCgCGU-GCGGUG-GGa -5'
28775 5' -61.6 NC_006146.1 + 53026 0.67 0.600712
Target:  5'- --cACGCgGCUGGcCGCGgcCGCCGCCg- -3'
miRNA:   3'- uacUGCGaCGACC-GCGU--GCGGUGGga -5'
28775 5' -61.6 NC_006146.1 + 170589 0.67 0.571044
Target:  5'- aAUGACaGCUggGCgUGGCgaGCGCGCCggGCCCg -3'
miRNA:   3'- -UACUG-CGA--CG-ACCG--CGUGCGG--UGGGa -5'
28775 5' -61.6 NC_006146.1 + 159328 0.68 0.532084
Target:  5'- uUGAgGCUgGCcGGCGUcucguGCGCCGCCUc -3'
miRNA:   3'- uACUgCGA-CGaCCGCG-----UGCGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 167178 0.67 0.610654
Target:  5'- -gGACGggagGCcGGCGCGCGCCcgggguCCCg -3'
miRNA:   3'- uaCUGCga--CGaCCGCGUGCGGu-----GGGa -5'
28775 5' -61.6 NC_006146.1 + 169974 0.67 0.610654
Target:  5'- -gGACGggagGCcGGCGCGCGCCcgggguCCCg -3'
miRNA:   3'- uaCUGCga--CGaCCGCGUGCGGu-----GGGa -5'
28775 5' -61.6 NC_006146.1 + 16201 0.67 0.610654
Target:  5'- gGUGG-GCUGCaucugGGCGCAgaCCACCCa -3'
miRNA:   3'- -UACUgCGACGa----CCGCGUgcGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 21255 0.67 0.610654
Target:  5'- --cGCGCUGCcGGCGCGUGCUcgACCUg -3'
miRNA:   3'- uacUGCGACGaCCGCGUGCGG--UGGGa -5'
28775 5' -61.6 NC_006146.1 + 43219 0.73 0.286019
Target:  5'- -gGGCGCUGCUGGUGagaggaGCCcCCCUg -3'
miRNA:   3'- uaCUGCGACGACCGCgug---CGGuGGGA- -5'
28775 5' -61.6 NC_006146.1 + 168112 0.7 0.396995
Target:  5'- -aGGC-CUGCUGGCGCcugGCGUCuuCCCUg -3'
miRNA:   3'- uaCUGcGACGACCGCG---UGCGGu-GGGA- -5'
28775 5' -61.6 NC_006146.1 + 102782 0.7 0.413743
Target:  5'- cGUGGCGCcGCUcccgcGGaccgGCugGCCGCCCa -3'
miRNA:   3'- -UACUGCGaCGA-----CCg---CGugCGGUGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.